View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_15 (Length: 294)
Name: NF9792_low_15
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 53603561 - 53603832
Alignment:
| Q |
17 |
acaatttgtttgagtttattgtaaa-tattaattatcaaacattgttgatcacagctttttcttatgcctatttttgctcctactttgggcgaggcaagg |
115 |
Q |
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| T |
53603561 |
acaatttgtttgagtttattgtaaaatattaat-atcaaacattgttgatcacagctttttcttatgcctatttttgctcctactttgggcgaggcaagg |
53603659 |
T |
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| Q |
116 |
cttctatcgattggactcttttttcactgtgtacatgtaagcatttatccctttgtaattttataagt--nnnnnnnnntacacatttttgtaaattcta |
213 |
Q |
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| T |
53603660 |
cttctatcgattggactcttttttcactgtgtacatgtaagcatttatccttttgtaattttataagtaaaaaaaaaaatacacatttttgtaaattcta |
53603759 |
T |
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| Q |
214 |
aattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcctttgct |
286 |
Q |
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| T |
53603760 |
aattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtcttttgct |
53603832 |
T |
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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 39170622 - 39170549
Alignment:
| Q |
206 |
aaattctaaattagtgctatcaaattgaatgcagatgttcatttacagcatagcatggtcctcatgggtatgtc |
279 |
Q |
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||||| |||||||||| |||||||||||||| |||||||||||||||| |||||||||||||| |||||||||| |
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| T |
39170622 |
aaattataaattagtgttatcaaattgaatgtagatgttcatttacagtatagcatggtcctcttgggtatgtc |
39170549 |
T |
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