View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_16 (Length: 290)
Name: NF9792_low_16
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 480617 - 480888
Alignment:
| Q |
1 |
aaaagaaacttcctagaaataaatataaagtccaagcccactaatcagttacagaaccctaataaaatcaaatgcatgcttcaaaataccaatcatcctc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480617 |
aaaagaaacttcctagaaataaatataaagcccaagcccactaatcagttacagaaccctaataaaatcaaatgcatgcttcaaaataccaatcatcctc |
480716 |
T |
|
| Q |
101 |
ccactcacgagaggcagctgctcacatcacataagggtaagcgttgtatatgtttgttaattgttgttgtgttatatttctttattcttataaactaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
480717 |
ccactcacgagaggcagctgctcacatcacataagggtaagcgttgtatatgtttgttaattgttgttgtgttatatttcttgattcttataaactaaaa |
480816 |
T |
|
| Q |
201 |
acttatcaaataattttgaagactaatatttcttccttattttgaagacaacaatggaaagacacaagaggc |
272 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
480817 |
acttatcaaacaattttgaagactaatatttcttccttattttgaagacaacaatggaaagacacaagaggc |
480888 |
T |
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