View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_17 (Length: 279)
Name: NF9792_low_17
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 264
Target Start/End: Complemental strand, 35361521 - 35361267
Alignment:
| Q |
10 |
gtgttcatcgtcatctggtaccttgatatttttgacggcaacaggttggtcttcatacaaaccatggtaaagcctactatgagctccatgagcaaaccta |
109 |
Q |
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| T |
35361521 |
gtgttcatcgtcatctggtaccttgatatttttgacggcaacaggttcgtcttcatacaaaccatggtaaagcctactatgagctccatgagcaaaccta |
35361422 |
T |
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| Q |
110 |
ggaccaacaaagagcttagagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcggttcttcgacttgtcactcaatctcatcg |
209 |
Q |
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| T |
35361421 |
ggaccaacaaagagcttagagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcggttcttcgacttatcactcaatctcatcg |
35361322 |
T |
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| Q |
210 |
atgaaaagtgcttaattgctattgccatgctggtgccgctgaacaatgaaaaagt |
264 |
Q |
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| T |
35361321 |
atgaaaagtgcctaattgctattgccatgctggtgccgctcaacaatgaaaaagt |
35361267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 35344435 - 35344703
Alignment:
| Q |
10 |
gtgttcatcgtcatctggtaccttgatatttttgacggcaacaggttggtcttcatacaaaccatggtaaagcctactatgagctccatgagcaaaccta |
109 |
Q |
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| T |
35344435 |
gtgttcatcgtcatctggtaccttgatatttttgacggcaacaggttcgtcttcatacaaaccatggtaaagcctactatgagctccatgagcaaaccta |
35344534 |
T |
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| Q |
110 |
ggaccaacaaagagcttagagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttc---------------ggttcttcgacttgt |
194 |
Q |
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| T |
35344535 |
ggaccaacaaagagcttagagaggtcaatattccatttatcctcagatgtttcaatcgcagtaacctttcctccacggtgctttgagttcttcgacttgt |
35344634 |
T |
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| Q |
195 |
cactcaatctcatcgatgaaaagtgcttaattgctattgccatgctggtgccgctgaacaatgaaaaag |
263 |
Q |
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| T |
35344635 |
cattcaatctcatcgatgaaaggtgcttaactgctgttgccatattggtgctgctaaacgatgaaaaag |
35344703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 35354664 - 35354538
Alignment:
| Q |
20 |
tcatctggtaccttgatatttttgacggcaacaggttggtcttcatacaaaccatggtaaagcctactatgagctccatgagcaaacctaggaccaacaa |
119 |
Q |
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| T |
35354664 |
tcatccggtaccctgattattttcacagcaacaggttcctcctcatacataccatggtaaagcctactgtgagccccataagcaaacctaagaccaacaa |
35354565 |
T |
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| Q |
120 |
agagcttagagaggtcaatattccatt |
146 |
Q |
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| T |
35354564 |
agagcttagagaggtcaacattccatt |
35354538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 35354471 - 35354418
Alignment:
| Q |
174 |
cctttcggttcttcgacttgtcactcaatctcatcgatgaaaagtgcttaattg |
227 |
Q |
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| T |
35354471 |
cctttcggttcttcaacttgtcactgaatcttatcgatgaaaagtgcctaattg |
35354418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 144
Target Start/End: Complemental strand, 3819428 - 3819354
Alignment:
| Q |
70 |
accatggtaaagcctactatgagctccatgagcaaacctaggaccaacaaagagcttagagaggtcaatattcca |
144 |
Q |
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| T |
3819428 |
accatggtaaagcctactatgagcgccatgagcgaacttatgaccaagaaacagcttagacatgtcaatagtcca |
3819354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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