View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_19 (Length: 250)
Name: NF9792_low_19
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_19 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 32158003 - 32158240
Alignment:
| Q |
14 |
agacctaactcatctacttatgaagaagnnnnnnngtgcgagagtttttggtaatg-ataattagttgtactatacctcaacaatgggagtaaaccatct |
112 |
Q |
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| T |
32158003 |
agacctaactcatctacttatgaagaagaaaaaaagtgtgagagtttgtggtactggataattagttgtactatacctcaacaatgggagtaaaccatct |
32158102 |
T |
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| Q |
113 |
aagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctgctaatacttgcaaccattcatcatcc |
212 |
Q |
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| T |
32158103 |
aagacgaaaacggggattagtagttcccttgacaggaatcaaatagcaggtaacattgatgttgaactcagctgctaatacttgcaaccattcatcatcc |
32158202 |
T |
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| Q |
213 |
ttctcttgatctaacaaacacactgctgcagggttccc |
250 |
Q |
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| T |
32158203 |
ttctcttgatctaacaaacacactgctgcagggttccc |
32158240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 32168978 - 32169142
Alignment:
| Q |
86 |
tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagct |
185 |
Q |
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| T |
32168978 |
tacctcagcaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttcagagatgttgaattcagca |
32169077 |
T |
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| Q |
186 |
gctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccc |
250 |
Q |
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| T |
32169078 |
gctactaattgcaaccattcatcatctttatcttcttctagtaaacacactgctgctggattccc |
32169142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 27325104 - 27325267
Alignment:
| Q |
87 |
acctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctg |
186 |
Q |
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| T |
27325104 |
acctcaacagtaggagtaaaccatctgagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcag |
27325203 |
T |
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| Q |
187 |
ctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccc |
250 |
Q |
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| T |
27325204 |
ctaatgcttgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccc |
27325267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 27350134 - 27350297
Alignment:
| Q |
87 |
acctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagctg |
186 |
Q |
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| T |
27350134 |
acctcaacaataggagtaaaccatttcagaccaaaacgaggaatagaggttccatgaataggagtcaaataacatgtttgagagacattgaattcagcag |
27350233 |
T |
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| Q |
187 |
ctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccc |
250 |
Q |
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| T |
27350234 |
ctaatgattgcaaccattcatcatctttatcttcttctaagaaacacactgctgctggattccc |
27350297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 32165187 - 32165351
Alignment:
| Q |
86 |
tacctcaacaatgggagtaaaccatctaagacgaaaacggggattagtggttcccttgacaggaatcaaataacaggtaacattgatgttgaactcagct |
185 |
Q |
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||||||||||| ||||||||||||||||||| |||||| ||| ||| |||||| | | || | ||| |||||| || | ||||||||| ||||| |
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| T |
32165187 |
tacctcaacaacaggagtaaaccatctaagaccaaaacgaggaatagaggttccatgaatagaagtcagataacatgtttccgagatgttgaattcagca |
32165286 |
T |
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| Q |
186 |
gctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccc |
250 |
Q |
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| T |
32165287 |
gctactgattgcaaccattcatcatctttatcttcttctaataaacacacagctgctggattccc |
32165351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 27358252 - 27358176
Alignment:
| Q |
174 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggttccc |
250 |
Q |
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| T |
27358252 |
ttgaactcagaagctaatgcttgcaaccattcatcatctttatcttcttctaataaacatactgctgctggattccc |
27358176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 44288314 - 44288241
Alignment:
| Q |
174 |
ttgaactcagctgctaatacttgcaaccattcatcatccttctcttgatctaacaaacacactgctgcagggtt |
247 |
Q |
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| T |
44288314 |
ttgaactcagctgctaatgcttgcaaccattcatcatccctctcttcttctaacaaacacactgctgcagggtt |
44288241 |
T |
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