View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_2 (Length: 718)
Name: NF9792_low_2
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 13 - 568
Target Start/End: Complemental strand, 44693352 - 44692796
Alignment:
| Q |
13 |
agcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaac |
112 |
Q |
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| T |
44693352 |
agcacagaacatccagcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaac |
44693253 |
T |
|
| Q |
113 |
caaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatattaaggcgggataggcaccac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
44693252 |
caaacagcacaaaaacaactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatcttaaggctggataggcaccac |
44693153 |
T |
|
| Q |
213 |
ctccacgataaaactttaacctc-tcaatgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattg |
311 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44693152 |
ctccacgataaaactttaacctcctcaacgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattg |
44693053 |
T |
|
| Q |
312 |
tcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44693052 |
tcgcgtgccaaatgagtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagagccaatgattaaaaacactttgcggcattataaa |
44692953 |
T |
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| Q |
412 |
catactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaac |
511 |
Q |
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| T |
44692952 |
catactatcaacccacttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatatttccatttcctcctcgcacaac |
44692853 |
T |
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| Q |
512 |
acacatctaaccgaaacctccggggggagggcattcctcctacgaagattccaccgc |
568 |
Q |
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| T |
44692852 |
acacatctaaccgaaacctccggggggagggcattccttctacgaagattccaccgc |
44692796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 562 - 699
Target Start/End: Complemental strand, 44692758 - 44692621
Alignment:
| Q |
562 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
661 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692758 |
ccaccacttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
44692659 |
T |
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| Q |
662 |
ccccatacatagatttaaccgtaaaattcccatcatct |
699 |
Q |
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| T |
44692658 |
ccccatacatagatttaactgtaaaattcccatcatct |
44692621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 244 - 543
Target Start/End: Original strand, 34866072 - 34866371
Alignment:
| Q |
244 |
ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatc |
343 |
Q |
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||||| ||| || ||| ||||||| ||||| ||||||||||| ||| |||||||| |||||||||| || ||||||||||||||||| ||||||||| |
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| T |
34866072 |
ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaaacccttaatc |
34866171 |
T |
|
| Q |
344 |
atcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaacc |
443 |
Q |
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| |||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| | ||||||| ||||||||||||| || || || |||| |
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| T |
34866172 |
aatttcttattagaggcacccgcattccaacacaaccaatgattaaaaacattttgaggcatcaaaaacatattatcaacccacttaaggagttctaacc |
34866271 |
T |
|
| Q |
444 |
aaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggc |
543 |
Q |
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||||||||||||||||| ||||||| | || |||||| | ||| ||||| | || ||||||| || |||| || ||||| |||||||| || ||||| |
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| T |
34866272 |
aaatccctctagccaccatacaatgcgcgaagaggtgaatggatgtttccgtctcaacctcgcataaagcacacctcaccgagacctccggaggaagggc |
34866371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 562 - 692
Target Start/End: Original strand, 34866434 - 34866563
Alignment:
| Q |
562 |
ccaccgcttttgacggagccgggcttttccaaagttgagaaaaaactcccaactcctccacactccacctattctccacaatccagctaccttcaagctt |
661 |
Q |
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||||| ||||||| || |||||||||||||||||||| ||| |||| |||||||||||||||||| | |||||||||||||| || ||||||| ||| |
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| T |
34866434 |
ccaccacttttgagggggccgggcttttccaaagttggagaaacactctcaactcctccacactccaattgttctccacaatccatctcccttcaaactt |
34866533 |
T |
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| Q |
662 |
ccccatacatagatttaaccgtaaaattccc |
692 |
Q |
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| T |
34866534 |
-cgcatacatagatttcaccgtgaatttccc |
34866563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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