View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9792_low_23 (Length: 216)

Name: NF9792_low_23
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9792_low_23
NF9792_low_23
[»] chr7 (13 HSPs)
chr7 (1-200)||(4711549-4711748)
chr7 (1-170)||(4696697-4696866)
chr7 (1-170)||(4637276-4637445)
chr7 (1-171)||(4864341-4864514)
chr7 (21-171)||(4653935-4654085)
chr7 (19-171)||(4845518-4845670)
chr7 (19-159)||(4783353-4783493)
chr7 (19-159)||(4815782-4815922)
chr7 (1-172)||(4673122-4673293)
chr7 (19-75)||(4644144-4644200)
chr7 (19-165)||(4631364-4631513)
chr7 (1-165)||(4667360-4667521)
chr7 (103-164)||(4644216-4644277)
[»] chr4 (1 HSPs)
chr4 (1-142)||(18925280-18925418)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 4711748 - 4711549
Alignment:
Q  1 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711748 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 4711649  T
Q  101 ttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttccttctcataataagggctgaagtttttaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4711648 ttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttccttctcataataagggctgaagtttttaag 4711549  T

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Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 4696866 - 4696697
Alignment:
Q  1 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 100  Q
    ||||||||| | ||||  ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||| || |||||||||     
T  4696866 tttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaacttctattccgttaatgaaagcataataaggatttgactggtttatgttgc 4696767  T
Q  101 ttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttc 170  Q
    | ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  4696766 tgggaatgaaagttatgtttaacttctcatttggtttggtttgaatgcaatattctttggtgattttttc 4696697  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 4637276 - 4637445
Alignment:
Q  1 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 100  Q
    ||||||||||| ||||  ||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||| |||||||||| || |||||| |||    
T  4637276 tttgggtcattgaggtttgtgtaatagagaaaagaaggcattgacacaacttcgatcccgttaataaaagcataacaaggatttgattggtttatgctgt 4637375  T
Q  101 ttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttc 170  Q
    | ||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  4637376 taggaatgaaagttatgtttaacttttcatttggtttgatttgtatgcaatattctttggtgattttttc 4637445  T

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Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 4864341 - 4864514
Alignment:
Q  1 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 100  Q
    ||||||||||| ||||  |||||||| |||||||||||||||||||| | ||| ||||| |||||||| ||||||||||||||||| |||||||| || |    
T  4864341 tttgggtcattgaggtttgtgtaatatagaaaagaaggcatagacacgacttctattccattaatgaaggcataataaggatttgattgatttatattat 4864440  T
Q  101 t---tggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttcc 171  Q
    |    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4864441 tggccggaatgaaagttatgtttagcttctcatttgatttgatttgaatgcaatattctttggtgattttttcc 4864514  T

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Target: chr7; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 4653935 - 4654085
Alignment:
Q  21 gtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgctt 120  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||| ||    
T  4653935 gtaatagagaaaagaaggcatagacacaacttcaattccattaatgaaagcataataaggatttgaatggtttgtgttgttgggaatgaaagttatgttt 4654034  T
Q  121 agcttctcatttggtttgatttgaatgcaatattctttggtgattttttcc 171  Q
    ||||||| ||| |||| || ||| ||||||||||||||||||||| |||||    
T  4654035 agcttcttattcggttggacttggatgcaatattctttggtgattgtttcc 4654085  T

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Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 4845670 - 4845518
Alignment:
Q  19 gtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgc 118  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||  | |  ||||||||||| |||| ||||||||||     
T  4845670 gtgtaatagagaaaagaaggcatcgacacaacttcgattccgttaacgaaagcataaaaaggattcaattcgtttatgttgttcggaaagaaagttatgt 4845571  T
Q  119 ttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttcc 171  Q
    |||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  4845570 ttagcttcccatttggtttgatctgaatgcaatattctttggtaattttttcc 4845518  T

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Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 4783493 - 4783353
Alignment:
Q  19 gtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgc 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |  | || ||| ||||||| |||||||||||||||     
T  4783493 gtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggaatcaattggtttgtgttgttgggaatgaaagttatgt 4783394  T
Q  119 ttagcttctcatttggtttgatttgaatgcaatattctttg 159  Q
    |||||||||| |||||||||||||| ||| |||||||||||    
T  4783393 ttagcttctcgtttggtttgatttggatggaatattctttg 4783353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 4815922 - 4815782
Alignment:
Q  19 gtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgc 118  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||| |  | || ||| ||||||| |||||||||||||||     
T  4815922 gtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataactaggactcaattggtttgtgttgttgggaatgaaagttatgt 4815823  T
Q  119 ttagcttctcatttggtttgatttgaatgcaatattctttg 159  Q
    |||||||||| |||||||||||||| ||| |||||||||||    
T  4815822 ttagcttctcgtttggtttgatttggatggaatattctttg 4815782  T

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Target: chr7; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 4673122 - 4673293
Alignment:
Q  1 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 100  Q
    ||||||||| | ||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |  |||||| |  || ||| ||     
T  4673122 tttgggtcactgaggtttgtgtaatagagaaaagaaggcattgacacaatttcgattccgttaatgaaagcatatttaacatttgatttgttcatgatgc 4673221  T
Q  101 ttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgattttttcct 172  Q
    ||||||||||| ||||| ||||||||||||| || |||||||| || ||| |||||||||||||| ||||||    
T  4673222 ttggaatgaaatttatgtttagcttctcattgggcttgatttggatacaaaattctttggtgattgtttcct 4673293  T

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Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 4644144 - 4644200
Alignment:
Q  19 gtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataa 75  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4644144 gtgtaatagagaaaagaaggcatagacacaacttcgattccgttaatgaaagcataa 4644200  T

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Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 4631364 - 4631513
Alignment:
Q  19 gtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatg------ttgtttggaatgaaag 112  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||||||| ||  ||  |||| | || ||| ||      || || ||||||||||    
T  4631364 gtgtaatagagaaaagaaggcatagacacaatctcaattccgttgatgaaagc-ta--aaccatttaattggtttgtgtttgtatttttgggaatgaaag 4631460  T
Q  113 ttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgatt 165  Q
    ||||| ||||||||||||||||    ||||| |||||||||||||||||||||    
T  4631461 ttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgatt 4631513  T

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Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 4667360 - 4667521
Alignment:
Q  1 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 100  Q
    ||||||||| | ||||  ||||||||||||||||| |||||||||||||| || |||||||| ||||||||   | ||| |||| | || ||| |||| |    
T  4667360 tttgggtcactgaggtttgtgtaatagagaaaagacggcatagacacaatctcaattccgttgatgaaagc---aaaagcatttaattggtttgtgtttt 4667456  T
Q  101 ttggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgatt 165  Q
    | ||||||||||||| |  ||| |||||   | ||||| | || |||||||||||||||||||||    
T  4667457 tgggaatgaaagttacgtctagtttctccccttgtttggtatggatgcaatattctttggtgatt 4667521  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 4644216 - 4644277
Alignment:
Q  103 ggaatgaaagttatgcttagcttctcatttggtttgatttgaatgcaatattctttggtgat 164  Q
    ||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||||| ||||    
T  4644216 ggaatgaaagttatgtttagcttctcatttgttttaatttggatgcaatactctttgatgat 4644277  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 18925418 - 18925280
Alignment:
Q  1 tttgggtcattaaggtccgtgtaatagagaaaagaaggcatagacacaatttcgattccgttaatgaaagcataataaggatttgaatgatttatgttgt 100  Q
    |||| |||||| ||||  ||||||||||||||||||||||| ||||| || || |||||||| ||||||||||||   |  ||||  ||||||||| |||    
T  18925418 tttgagtcattgaggtttgtgtaatagagaaaagaaggcatggacacgatctcaattccgttgatgaaagcataa---gcctttggttgatttatggtgt 18925322  T
Q  101 ttggaatgaaagttatgcttagcttctcatttggtttgattt 142  Q
    ||||||||||||||||  ||| ||||||| ||||||| ||||    
T  18925321 ttggaatgaaagttatatttaacttctcagttggtttcattt 18925280  T

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