View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_3 (Length: 502)
Name: NF9792_low_3
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 25 - 490
Target Start/End: Original strand, 48536851 - 48537316
Alignment:
| Q |
25 |
actacacatcaaggaaccaatgtttccaatacaaaaacaagctcaattgaatttcagggaaagtacgatgctttcaaacactgtattggacaaatagact |
124 |
Q |
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| T |
48536851 |
actacacatcaaggaaccaatgtttccaatacaaaaataagctcaattgaatttcagggaaagtacgatgctttcaaacactgtattggacaaatagact |
48536950 |
T |
|
| Q |
125 |
tagagtaacaaacttttaattgcaaataaataaatatgttgagggtatgaaaaggtgaaaagggaaagttcataccatcccgtttatgctccgtcgtaga |
224 |
Q |
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| T |
48536951 |
tagagtaacaaacttttaattgcaaataaataaatatgttgagggtatgaaaaggtgaaaagggaaagttcataccatcccgtttatgctccgtcgtaga |
48537050 |
T |
|
| Q |
225 |
acggtaaagcaaagaagtaaagaagagtgtattagccataaaatcagacatgtgatcagccaacaaaggatactcaacaccagcaatcaacccttttctg |
324 |
Q |
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| T |
48537051 |
acggtaaagcaaagaagtaaagaagagtgtattagccataaaatcagacatgtgatcagccaacaaaggatactcaacaccagcaatcaacccttttctg |
48537150 |
T |
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| Q |
325 |
agaattatatgtggtggctccaaataacgcataccaatcaaggacatagtacgatcaaaatgatacacttcaggaacatgatcaggactcaatttaccct |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48537151 |
agaattatatgtggtggctccaaataacgcataccaatcaaagacatagtacgatcaaaatgatacacttcaggaacatgatcaggactcaatttaccct |
48537250 |
T |
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| Q |
425 |
cttctttcaatgccaatgactcaaaataggctctttctttcgtcattggccatgattctcctatgc |
490 |
Q |
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| T |
48537251 |
cttctttcaatgccaatgactcaaaataggctctttctttcgtcattggccatgattctcctatgc |
48537316 |
T |
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