View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_4 (Length: 472)
Name: NF9792_low_4
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 43639407 - 43639861
Alignment:
| Q |
18 |
acaaccgacatgcctcttctggcttcaccaatccaactccgatctccattatcttcaccaccgccaaatccgtcatacacctctcagcctccggtgacaa |
117 |
Q |
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| T |
43639407 |
acaaccggcatgcctcttctggcttcaccaatccaactccgatctccattatcttcaccaccgccaaatccgtcatacacctctcagcccccggtgacaa |
43639506 |
T |
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| Q |
118 |
cttcgccggcacaaccaccgactctggcatcccttcaacattaggcctaatcccaccccaatacccacaaaaagcatgccacacataaacctcctttaat |
217 |
Q |
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| T |
43639507 |
cttcgccggcattatcaccgactctggcatcccttcaacattaggcctaatcccaccccaatacccacaaaaagcatgccacacataaacctcctttaat |
43639606 |
T |
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| Q |
218 |
aaacccctaaattcctcctttaaatccctcacaaacccacccatacctaaagattcatcatattccttaaattttttattttcttcaaaacttattaacc |
317 |
Q |
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| T |
43639607 |
aaacccctaaattcctcctttaaatccctcacaaacccacccatacctaaagattcatcatattccttaaattttttattttcttcaaaacttattaacc |
43639706 |
T |
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| Q |
318 |
ttcccaacatttgttcaccaggtatagaacaattcaaacttaaacaatcaccaccgttcaaaaaatcttcatcatcacgacaaaaattttgccaaccatc |
417 |
Q |
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| T |
43639707 |
ttcccaacatttgttcgccaggtatagaacaattcaaacttaaacaatcaccaccgttcaaaaaatcttcatcatcacgacaaaaattttgccaaccatc |
43639806 |
T |
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| Q |
418 |
atcaatgattacaaaacttggaggacacccaccttctactaaacccttaacacct |
472 |
Q |
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| T |
43639807 |
atcaatgattacaaaacttggaggacacccaccttctactaaacccttaacacct |
43639861 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 486818 - 486766
Alignment:
| Q |
152 |
tcaacattaggcctaatcccaccccaatacccacaaaaagcatgccacacata |
204 |
Q |
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| T |
486818 |
tcaacattaggtcttatcccaccccaataaccacataaagcatgccacacata |
486766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 34698214 - 34698263
Alignment:
| Q |
158 |
ttaggcctaatcccaccccaatacccacaaaaagcatgccacacataaac |
207 |
Q |
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| T |
34698214 |
ttaggtctaaccccaccccaatacccacaaagtgcatgccaaacataaac |
34698263 |
T |
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