View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9792_low_7 (Length: 352)

Name: NF9792_low_7
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9792_low_7
NF9792_low_7
[»] chr4 (4 HSPs)
chr4 (17-343)||(2282107-2282433)
chr4 (107-238)||(16989575-16989706)
chr4 (290-338)||(4913520-4913568)
chr4 (290-338)||(43441487-43441535)
[»] chr8 (5 HSPs)
chr8 (97-340)||(9936264-9936506)
chr8 (145-330)||(8273714-8273898)
chr8 (93-199)||(37269814-37269920)
chr8 (93-199)||(42941248-42941354)
chr8 (122-199)||(36404064-36404141)
[»] chr7 (2 HSPs)
chr7 (106-340)||(42460085-42460318)
chr7 (122-238)||(31234745-31234861)
[»] chr6 (2 HSPs)
chr6 (107-342)||(1034165-1034400)
chr6 (107-238)||(18246531-18246662)
[»] chr1 (1 HSPs)
chr1 (122-305)||(32774127-32774309)
[»] chr2 (4 HSPs)
chr2 (81-339)||(1479407-1479662)
chr2 (113-330)||(11272409-11272624)
chr2 (188-343)||(13016919-13017073)
chr2 (122-188)||(33858654-33858720)
[»] chr3 (3 HSPs)
chr3 (92-199)||(53553622-53553727)
chr3 (122-238)||(1259293-1259409)
chr3 (122-238)||(37242581-37242697)
[»] scaffold0760 (1 HSPs)
scaffold0760 (93-199)||(1693-1799)


Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 2282433 - 2282107
Alignment:
Q  17 agctagcgcagcaccgaaaaaccacaaggagagggctacagcctaaaaacaagaagagaagagaccacacaaaccactatagcatatccaaaaaagacag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2282433 agctagcgcagcaccgaaaaaccacaaggagagggctacagcctaaaaacaagaagagaagagaccacacaaaccactatagcatatccaaaaaagacgg 2282334  T
Q  117 catctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgaccacacccaagaa 216  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2282333 catctttcatcttctatttaggcattccctagggttctaagtccattcatagaagaggaacgatgctttctttaatctactcaatgaccacacccaagaa 2282234  T
Q  217 accgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttcttttccaaattaaccaaattgtggcatgc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  2282233 accgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttc-tttccaaattaaccaaattgtgacatgc 2282135  T
Q  317 caaatcaac-aaaaaacctttcctatgc 343  Q
    ||||||||| ||||||||||||||||||    
T  2282134 caaatcaacaaaaaaacctttcctatgc 2282107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 238
Target Start/End: Complemental strand, 16989706 - 16989575
Alignment:
Q  107 aaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgacca 206  Q
    |||||||||||  | |||||||||| ||||| ||||| |  || ||||| ||||| |||||||||||||| || ||| |||| || |||||||    |||    
T  16989706 aaaaagacagccgcgttcatcttctgtttagacattctcatggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatcca 16989607  T
Q  207 cacccaagaaaccgctttaatctcatccacta 238  Q
     |||||||||| ||||||||| |||| |||||    
T  16989606 aacccaagaaagcgctttaatttcattcacta 16989575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 4913520 - 4913568
Alignment:
Q  290 ttccaaattaaccaaattgtggcatgccaaatcaacaaaaaacctttcc 338  Q
    |||||||| | |||||||| |||||||||||||| ||||||| ||||||    
T  4913520 ttccaaatcatccaaattgaggcatgccaaatcatcaaaaaagctttcc 4913568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 43441487 - 43441535
Alignment:
Q  290 ttccaaattaaccaaattgtggcatgccaaatcaacaaaaaacctttcc 338  Q
    |||||||| | |||||||| |||||||||||||| ||||||| ||||||    
T  43441487 ttccaaatcatccaaattgaggcatgccaaatcatcaaaaaagctttcc 43441535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 97 - 340
Target Start/End: Complemental strand, 9936506 - 9936264
Alignment:
Q  97 agcatatccaaaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctac 196  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||| |  ||||||||||||||||| ||||| ||||||||||||||| |||||| ||| |    
T  9936506 agcagatccaaaaaagccagcacctttcatcttctatttaggcactgtctagggttccaagtccactcataaaagaggaacgatgctatctttagtctgc 9936407  T
Q  197 tcattgaccacacccaagaaaccgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttcttttccaaa 296  Q
    |||    |||||||||||| ||||||| ||||||||||||||| |   ||||| ||||| |||| |  |||||||||| | |||| |||||   ||||||    
T  9936406 tcaacatccacacccaagacaccgcttcaatctcatccactaactccccaacatccttctctttgtgattgaaaatccgtgcatttctttc-catccaaa 9936308  T
Q  297 ttaaccaaattgtggcatgccaaatcaacaaaaaacctttccta 340  Q
    | |||||||| |||||||||||||||||||||||||||||||||    
T  9936307 tcaaccaaatagtggcatgccaaatcaacaaaaaacctttccta 9936264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 330
Target Start/End: Complemental strand, 8273898 - 8273714
Alignment:
Q  145 ctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgaccacacccaagaaaccgctttaatctcatccactaaattat 244  Q
    ||||| |||||| |||| ||||| |||||||| || ||| |||||||||||||| | | ||| |||||||||||||| ||||||||||||||||| |  |    
T  8273898 ctaggattccaaatccactcataaaagaggaaagaagctatctttaatctactcgtcgtccaaacccaagaaaccgccttaatctcatccactaactcct 8273799  T
Q  245 caacacccttcactttattgttgaaaatcctttcattgctttcttttccaaattaaccaaattgtggcatgccaaatcaacaaaaa 330  Q
    | ||  | |||| || |||||| ||||||||| |||| |||||  ||||||||  |||||||||| ||||||||||||||| ||||    
T  8273798 ccacttctttcatttgattgttaaaaatccttgcatttctttc-cttccaaatcgaccaaattgtcgcatgccaaatcaaccaaaa 8273714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 37269814 - 37269920
Alignment:
Q  93 ctatagcatatccaaaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaat 192  Q
    |||||||| ||||||||||||||||    ||||||||||||| || ||||| ||||| ||||||||||| ||||| |||||||| || ||| |||| | |    
T  37269814 ctatagcagatccaaaaaagacagccggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagt 37269913  T
Q  193 ctactca 199  Q
    |||||||    
T  37269914 ctactca 37269920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 42941354 - 42941248
Alignment:
Q  93 ctatagcatatccaaaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaat 192  Q
    |||||||| ||||||||||||||||    |||||||||||||  | ||||| ||||| ||||||||||| ||||| |||||||| || ||| |||||| |    
T  42941354 ctatagcagatccaaaaaagacagccggcttcatcttctattacgacattctctaggattccaagtccactcataaaagaggaaggaagctatctttagt 42941255  T
Q  193 ctactca 199  Q
    |||||||    
T  42941254 ctactca 42941248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 199
Target Start/End: Original strand, 36404064 - 36404141
Alignment:
Q  122 ttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactca 199  Q
    |||||||||||||||  ||||| ||||| ||||||||||| || ||||||||||| || ||| |||| | ||||||||    
T  36404064 ttcatcttctatttaaacattctctaggattccaagtccactcgtagaagaggaaggaagctatcttaagtctactca 36404141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 106 - 340
Target Start/End: Original strand, 42460085 - 42460318
Alignment:
Q  106 aaaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgacc 205  Q
    ||||||| ||||| ||||||||||||||||||||| || ||||| ||||||||| | ||||| ||||||||||||||| ||||||  || |||| |  ||    
T  42460085 aaaaaaggcagcacctttcatcttctatttaggcactctctaggattccaagtctactcataaaagaggaacgatgctatctttagcctgctcagtatcc 42460184  T
Q  206 acacccaagaaaccgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttcttttccaaattaaccaaa 305  Q
    |||||||||| ||||||||||||||||||||||| |   ||||| ||||| |||| |  ||||||||||   |||| |||||  |||||||| |||||||    
T  42460185 acacccaagacaccgctttaatctcatccactaactccccaacatccttctctttttgattgaaaatccgggcatttctttc-cttccaaatcaaccaaa 42460283  T
Q  306 ttgtggcatgccaaatcaacaaaaaacctttccta 340  Q
    | |||||||||||||||||||||||||||||||||    
T  42460284 tagtggcatgccaaatcaacaaaaaacctttccta 42460318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 31234745 - 31234861
Alignment:
Q  122 ttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgaccacacccaagaaaccgc 221  Q
    |||||||||| ||||| ||||| |  || ||||||||||| |||||||||||||| || ||| |||| || |||||||    ||| |||||||||| |||    
T  31234745 ttcatcttctgtttagacattctcgtggattccaagtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgc 31234844  T
Q  222 tttaatctcatccacta 238  Q
    |||||| |||| |||||    
T  31234845 tttaatttcattcacta 31234861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 107 - 342
Target Start/End: Complemental strand, 1034400 - 1034165
Alignment:
Q  107 aaaaagacagcatctttcatcttc-tatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgacc 205  Q
    |||||||||||| ||||||||| | |||||||||| ||  |||| ||||||||||| ||||| ||||||||||||||| |||||||||||||||  | ||    
T  1034400 aaaaagacagcacctttcatctccctatttaggcactctttaggattccaagtccactcataaaagaggaacgatgctatctttaatctactcaacgtcc 1034301  T
Q  206 acacccaagaaaccgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttcttttccaaattaaccaaa 305  Q
    | |||||||||||||||||||||||||||||||  | | ||||  ||||| |||| || || ||||||||| |||| |||||  |||||||| |||||||    
T  1034300 aaacccaagaaaccgctttaatctcatccactatctcaccaacctccttcgctttgttattaaaaatccttgcatttctttc-cttccaaatcaaccaaa 1034202  T
Q  306 ttgtggcatgccaaatcaacaaaaaacctttcctatg 342  Q
    |||| || |||||||||||| ||||||||||| ||||    
T  1034201 ttgtcgcgtgccaaatcaaccaaaaacctttcttatg 1034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 238
Target Start/End: Original strand, 18246531 - 18246662
Alignment:
Q  107 aaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgacca 206  Q
    |||||||||||  | |||||||||| ||||| ||||| |  || ||||| ||||| |||||||||||||| || ||| |||| || |||||||    |||    
T  18246531 aaaaagacagccgcgttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatcca 18246630  T
Q  207 cacccaagaaaccgctttaatctcatccacta 238  Q
     |||||||||| ||||||||| |||| |||||    
T  18246631 aacccaagaaagcgctttaatttcattcacta 18246662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 305
Target Start/End: Original strand, 32774127 - 32774309
Alignment:
Q  122 ttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgaccacacccaagaaaccgc 221  Q
    ||||||||||||||||||| || ||||| ||||||||||| ||||| |||||||| || ||| |||||||||||||||  | ||| ||||||||||||||    
T  32774127 ttcatcttctatttaggcactctctaggattccaagtccactcataaaagaggaatgaggctatctttaatctactcaacgtccaaacccaagaaaccgc 32774226  T
Q  222 tttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttcttttccaaattaaccaaa 305  Q
    ||| ||||||||||||||||  |||||  |||||  ||  |||||||| |||||| |||| |||||  |||||||| |||||||    
T  32774227 tttgatctcatccactaaatcctcaacctccttcgtttggttgttgaagatccttgcatttctttc-cttccaaatcaaccaaa 32774309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 81 - 339
Target Start/End: Original strand, 1479407 - 1479662
Alignment:
Q  81 ccacacaaaccactatagcatatccaaaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgat 180  Q
    |||||||||| |  |||||| |||||||||| ||||||  ||||||||| |||||||||| ||  |||| ||||||||||| ||||| ||||||||||||    
T  1479407 ccacacaaacaatcatagcagatccaaaaaa-acagcacatttcatcttttatttaggcactc--taggattccaagtccactcataaaagaggaacgat 1479503  T
Q  181 gctttctttaatctactcattgaccacacccaagaaaccgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcat 280  Q
    ||| |||||||||||||||  | |||  |||| ||||||||||| ||||| || ||||  |  || ||  ||||| |||| ||| ||||||||||| |||    
T  1479504 gctatctttaatctactcagcgtccaatcccacgaaaccgctttgatctcgtcaactacctcttccacctccttctctttgttggtgaaaatccttgcat 1479603  T
Q  281 tgctttcttttccaaattaaccaaattgtggcatgccaaatcaac-aaaaaacctttcct 339  Q
    | |||||  |||||| | |||||||| ||||||  |||||||||| ||||||||||||||    
T  1479604 ttctttc-cttccaagtcaaccaaatggtggcacaccaaatcaacaaaaaaacctttcct 1479662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 330
Target Start/End: Complemental strand, 11272624 - 11272409
Alignment:
Q  113 acagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgaccacaccca 212  Q
    ||||| || |||||||||||||| |||| || |||||  ||||||| || |||||||||||||| || ||| ||||||| |||||||  | ||| |||||    
T  11272624 acagcgtcgttcatcttctatttgggcactctctaggaatccaagttcactcatagaagaggaaagaagctatctttaacctactcaacgtccaaaccca 11272525  T
Q  213 agaaaccgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttcttttccaaattaaccaaattgtggc 312  Q
    |||||||||||| || |||| ||| |  |  || ||  ||||   || ||| |||||||||||| |||| ||||||||  ||||| ||||||||||| ||    
T  11272524 agaaaccgctttgatttcattcacaatttcctccacttcctttctttgattattgaaaatccttgcatttctttcttt--caaatcaaccaaattgttgc 11272427  T
Q  313 atgccaaatcaacaaaaa 330  Q
    ||||||||||||| ||||    
T  11272426 atgccaaatcaaccaaaa 11272409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 343
Target Start/End: Original strand, 13016919 - 13017073
Alignment:
Q  188 ttaatctactcattgaccacacccaagaaaccgctttaatctcatccactaaattatcaacacccttcactttattgttgaaaatcctttcattgctttc 287  Q
    ||||||||||||  | ||| |||||||||||| |||| |||||||||||||  |  || ||  |||||||||| || || ||||||||  |||| |||||    
T  13016919 ttaatctactcaacgtccaaacccaagaaaccacttttatctcatccactagttcctctacttccttcactttgttcttaaaaatcctagcatttctttc 13017018  T
Q  288 ttttccaaattaaccaaattgtggcatgccaaatcaacaaaaaacctttcctatgc 343  Q
      | ||||||  |||||||||| ||||||||||||||| ||||||||||| |||||    
T  13017019 cat-ccaaatcgaccaaattgtcgcatgccaaatcaaccaaaaacctttcttatgc 13017073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 33858654 - 33858720
Alignment:
Q  122 ttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctt 188  Q
    |||||||||||||||| ||||| | ||| ||||||||||| ||||| |||||||| || ||||||||    
T  33858654 ttcatcttctatttagacattctcgaggattccaagtccactcatataagaggaaggaagctttctt 33858720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 92 - 199
Target Start/End: Original strand, 53553622 - 53553727
Alignment:
Q  92 actatagcatatccaaaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaa 191  Q
    ||||||||| ||||||||||  ||||  ||||||||| ||||||||||| || ||||| ||||||||||| ||||| |||||||| || ||| |||||||    
T  53553622 actatagcagatccaaaaaa--cagcgcctttcatctcctatttaggcactctctaggattccaagtccactcataaaagaggaaagaagctatctttaa 53553719  T
Q  192 tctactca 199  Q
    ||||||||    
T  53553720 tctactca 53553727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 1259293 - 1259409
Alignment:
Q  122 ttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgaccacacccaagaaaccgc 221  Q
    |||||||||| ||||| ||||| |  || ||||| ||||| |||||||||||||| || ||| |||| || |||||||    ||| |||||||||| |||    
T  1259293 ttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgc 1259392  T
Q  222 tttaatctcatccacta 238  Q
    |||||| |||| |||||    
T  1259393 tttaatttcattcacta 1259409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 37242581 - 37242697
Alignment:
Q  122 ttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaatctactcattgaccacacccaagaaaccgc 221  Q
    |||||||||| ||||| ||||| |  || ||||| ||||| |||||||||||||| || ||| |||| || |||||||    ||| |||||||||| |||    
T  37242581 ttcatcttctgtttagacattctcgtggattccacgtccactcatagaagaggaaagaagctatcttcaacctactcaacatccaaacccaagaaagcgc 37242680  T
Q  222 tttaatctcatccacta 238  Q
    |||||| |||| |||||    
T  37242681 tttaatttcattcacta 37242697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 1693 - 1799
Alignment:
Q  93 ctatagcatatccaaaaaagacagcatctttcatcttctatttaggcattccctagggttccaagtccattcatagaagaggaacgatgctttctttaat 192  Q
    |||||||| |||||||||||||||     ||||||||||||| || ||||| ||||| ||||||||||| ||||| |||||||| || ||| |||| | |    
T  1693 ctatagcagatccaaaaaagacagtcggcttcatcttctattaagacattctctaggattccaagtccactcataaaagaggaaggaagctatcttaagt 1792  T
Q  193 ctactca 199  Q
    |||||||    
T  1793 ctactca 1799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University