View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9792_low_8 (Length: 344)
Name: NF9792_low_8
Description: NF9792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9792_low_8 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 161735 - 162036
Alignment:
| Q |
18 |
cagaacaaaccggagaagagtgattagatctccttgttgaaagatgtaaacagagttttaatgagtttacctagtctatgtaaacagtatgcctaaactg |
117 |
Q |
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| T |
161735 |
cagaacaaaccggagaagagtgattagatctccttgttgaaagatgtaaacatagttt-aatgagtttacctagtctatgtaaacagtatgcctaaactg |
161833 |
T |
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| Q |
118 |
agttttatgtctacattaatttcctacttgtaggtattctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattc |
217 |
Q |
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| T |
161834 |
agttttatgtctacattaatttcctacttgtaggttttctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattc |
161933 |
T |
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| Q |
218 |
ttcgttacatttactgtcaccaggtaggtgttatcattctagtctatttcaacacacatttatttacctattttgaacatgatgcatgcaaatataattg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
161934 |
ttcgttacatttactgtcaccaggtaggtgttatcattctagtctatttcaacacacatttatttacctattttgaacatgatgcatgcatatatatttg |
162033 |
T |
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| Q |
318 |
ttt |
320 |
Q |
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| T |
162034 |
ttt |
162036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 132 - 252
Target Start/End: Original strand, 102746 - 102867
Alignment:
| Q |
132 |
attaatttcctac-ttgtaggtattctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacattta |
230 |
Q |
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| T |
102746 |
attaattttctacattgcaggttttctgtgtctacattactggacatcttgattccgtcttcccacgagaacatcgcaaagagattcttcgttacattta |
102845 |
T |
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| Q |
231 |
ctgtcaccaggtaggtgttatc |
252 |
Q |
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| T |
102846 |
ctgtcaccaagtatgtgctatc |
102867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 93658 - 93578
Alignment:
| Q |
163 |
tacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttactgtcaccaggta |
243 |
Q |
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| T |
93658 |
tacattactggacatcttgattctgtattcccaccggaacatcgtaaagagattcttcgttacatatattgtcaccaggta |
93578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 13051643 - 13051729
Alignment:
| Q |
157 |
tgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttactgtcaccaggta |
243 |
Q |
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| T |
13051643 |
tgtgtttacattacgggacatcttgatttggtattcccacaagagcattgcaaagagattcttcattacatatattgtcatcaggta |
13051729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 12138514 - 12138439
Alignment:
| Q |
149 |
aggtattctgtgtatacattacaggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgtta |
224 |
Q |
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| T |
12138514 |
aggttttctgtatgtacattacaggacatcttgattctatattctcaaaagagcatcgtaaggagattcttcgtta |
12138439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 5693591 - 5693519
Alignment:
| Q |
171 |
aggacaccttgattctgtattcccacaagagcatcgcaaagagattcttcgttacatttactgtcaccaggta |
243 |
Q |
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| T |
5693591 |
aggacatcttgattcggtattccccaaagagtatcggaaagagattctccgttacatatattgtcatcaggta |
5693519 |
T |
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