View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9793_low_1 (Length: 668)
Name: NF9793_low_1
Description: NF9793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9793_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 624; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 21 - 652
Target Start/End: Original strand, 23044054 - 23044685
Alignment:
| Q |
21 |
gctgatacctttgttcagctgctatctctatttctatcttggtgattttaaatttatgaatgacgagtcaataatttcttgcagaattttttgtacttct |
120 |
Q |
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| T |
23044054 |
gctgatacctttgttcagctgctatctctatttctatcttggtgattttaaatttatgaatgacgagtcaataatttcttgcagaattttttgtacttct |
23044153 |
T |
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| Q |
121 |
gcttttcttctataactaaacttataccgtctgtactttgcaaattgttttgttacttgttgtatatgctcgaaattatgtttttggaatattctgtatt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23044154 |
gcttttcttctataactaaacttataccgtctgtactttgcaaattgttttgttacttgttgtatatgctcgaaattatgtttttggaatattctgtatt |
23044253 |
T |
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| Q |
221 |
tgttcatcagaagttgagtgaatctatttttgcttcaggggtgatgttgttcaagtagacacttgggtttctgcggcaggaaaaaatggtatgcgtcgtg |
320 |
Q |
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| T |
23044254 |
tgttcatcagaagttgagtgaatctatttttgcttcaggggtgatgttgttcaagtagacacttgggtttctgcggcaggaaaaaatggtatgcgtcgtg |
23044353 |
T |
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| Q |
321 |
attggcttgtgcgcgacgccaaaacaggggaaatcttgacaagagcatccaggtaaaagtcaattcagaacctttcttgctcctttcttcagtggccata |
420 |
Q |
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| T |
23044354 |
attggcttgtgcgcgacgccaaaacaggggaaatcttgacaagagcatccaggtaaaagtcaattcagaacctttcttgctcctttcttcagtggccata |
23044453 |
T |
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| Q |
421 |
agatatgttgtaaatgttttttctgaatctgaatgtgcatgccttgtgactggccactgtttttaatcttgcaagctttatcctattttacaaaatttga |
520 |
Q |
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| T |
23044454 |
agatatgttgtaaatgttttttctgaatctaaatgtgcttgccttgtgactggccactgtttttaatcttgcaagctttatcctattttacaaaatttga |
23044553 |
T |
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| Q |
521 |
taattgaatattcagtttgcttttgtcaaattggtttgagatttaagtgtagcagtaaattacttattagatatttaagttatacatgaagcacttttgc |
620 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23044554 |
taattgaatattcagtttgcttttgtcaaattggtttgagatttaagtgtagcagtaaattacttattagatatttaagttatacatgaagcacttttgc |
23044653 |
T |
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| Q |
621 |
aatttctgatttgttggttttgcttttgatgt |
652 |
Q |
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| T |
23044654 |
aatttctgatttgttggttttgcttttgatgt |
23044685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 46402539 - 46402613
Alignment:
| Q |
254 |
ttcaggggtgatgttgttcaagtagacacttgggtttctgcggcaggaaaaaatggtatgcgtcgtgattggctt |
328 |
Q |
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|||||||| ||||||||||| ||||| |||||||||||||| | || || |||||||||||||||||||||||| |
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| T |
46402539 |
ttcaggggagatgttgttcatgtagaaacttgggtttctgcatcgggcaagaatggtatgcgtcgtgattggctt |
46402613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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