View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9793_low_14 (Length: 277)
Name: NF9793_low_14
Description: NF9793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9793_low_14 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 2690152 - 2689876
Alignment:
| Q |
1 |
aaattgtcgatgctttcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatag |
100 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2690152 |
aaattgtggatgcttgcattcatgatttgagtcccaacactgaggctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatag |
2690053 |
T |
|
| Q |
101 |
accaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2690052 |
accaaacatgtccgatattgtttcgatgcttgagagtgaagcaacaactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggac |
2689953 |
T |
|
| Q |
201 |
agagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcacaacggtagaagggagatagaactgatg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2689952 |
agagagtgttacaaggatggtgttgatatttcaaatgatcttgcagtcacaacggtagaagggagatagaactgatg |
2689876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 45 - 268
Target Start/End: Complemental strand, 2697914 - 2697691
Alignment:
| Q |
45 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
144 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| | | ||||||| |||||||||| |
|
|
| T |
2697914 |
gctttgagatgtatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaatatgtccaaagttgtgttgttgcttgagagtgaagcaa |
2697815 |
T |
|
| Q |
145 |
caactcttcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgc |
244 |
Q |
| |
|
| ||||||||| ||||||||||||||||| ||||||||| | ||||||| ||| ||||||| ||||| ||||||| ||||| ||||||||||||| | |
|
|
| T |
2697814 |
cgactcttcccatacctacgcagcctttgattacttccatgaggagatctgaggatagagagttttacatggatggtcttgattgttcaaatgatctcac |
2697715 |
T |
|
| Q |
245 |
agtcacaacggtagaagggagata |
268 |
Q |
| |
|
||| |||| ||||| ||||||||| |
|
|
| T |
2697714 |
agttacaatggtagcagggagata |
2697691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 52 - 270
Target Start/End: Complemental strand, 14519269 - 14519051
Alignment:
| Q |
52 |
gatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaacaactct |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||| | ||||||||| ||| || ||| ||||| |
|
|
| T |
14519269 |
gatgcatacaaatagggatgttatgtgtgcaagatttagcatctcgacgaccaaagatgtccgaaattgtgttgatgcttgagagtaaatcaattactct |
14519170 |
T |
|
| Q |
152 |
tcccttacctacgcagcctttggatacttccatcaaaagatctgtggacagagagtgttacaaggatggtgttgatatttcaaatgatctcgcagtcaca |
251 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| || ||||||||| | |||| ||| ||||||| |||||||||||| || ||||| |
|
|
| T |
14519169 |
tcccttacctatgcagcctttgattacttccatcaaaagaaacgttaacagagagtctcccaagaatgctgttgatgactcaaatgatctcacaatcaca |
14519070 |
T |
|
| Q |
252 |
acggtagaagggagataga |
270 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
14519069 |
atggtagaagggagataga |
14519051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 36291110 - 36291222
Alignment:
| Q |
45 |
gctttgagatgcatacaaatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtccgatattgtttcgatgcttgaaagtgaagcaa |
144 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||||||||||| |
|
|
| T |
36291110 |
gctttgagatgcatccacatagggatgttatgtgtgcaagattcagcatctcatagaccaaacatgtcctcagtggtgttgatgcttgaaagtgaagcaa |
36291209 |
T |
|
| Q |
145 |
caactcttccctt |
157 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36291210 |
caactcttccctt |
36291222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University