View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9793_low_22 (Length: 238)
Name: NF9793_low_22
Description: NF9793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9793_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42685679 - 42685902
Alignment:
| Q |
1 |
ccagtattgaatttgggtttagaagcatggagaacagaagaagtcaaaacagcatgcgatgcttcgtacgaaaaacatgttattctcttcggcattttcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42685679 |
ccagtattgaatttgggtttagaagcatggagaacagaagaagtcaaaacagcatgcgatgcttcgtatgaaaaacatgttattctcttcggcattttcc |
42685778 |
T |
|
| Q |
101 |
tctttgtggtttctctaatgggtttcgtaggtgcttgttttcgatcgttcaaaattctagggttctatctccttatcctattcttggcattcttttttct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42685779 |
tctttgtggtttctctaatgggtttcgtaggtgcttgttttcgatcgttcaaaattctagggttctatctccttatcctattcttggcattcttttttct |
42685878 |
T |
|
| Q |
201 |
attctacatcaacatcttcaatct |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
42685879 |
attctacatcaacatcttcaatct |
42685902 |
T |
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