View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9793_low_23 (Length: 237)
Name: NF9793_low_23
Description: NF9793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9793_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 26606479 - 26606400
Alignment:
| Q |
12 |
caaaggcaacaacatttgcataatgtgagtgatatggatgagttgattcaatatgaccaagtaatatcttcaaatatagt |
91 |
Q |
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| T |
26606479 |
caaaggcaacaacatttgcataatgtgagtgatatggatgagttgattcaatatgaccaagtaatatcttcaaatatagt |
26606400 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 220
Target Start/End: Complemental strand, 26606338 - 26606272
Alignment:
| Q |
154 |
tgccccaatcgtacacttctatgcctgagaaagaatttaaaagtagaaaagaaataaggtagcaaat |
220 |
Q |
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| T |
26606338 |
tgccccaatcgtacacttctatgcctgcgaaagaatttaaaagtagaaaagaaataagatagcaaat |
26606272 |
T |
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