View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9793_low_25 (Length: 227)

Name: NF9793_low_25
Description: NF9793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9793_low_25
NF9793_low_25
[»] chr4 (3 HSPs)
chr4 (67-223)||(16668388-16668544)
chr4 (68-223)||(36575061-36575216)
chr4 (5-67)||(14032500-14032562)
[»] chr1 (4 HSPs)
chr1 (67-155)||(44516709-44516797)
chr1 (8-67)||(32175883-32175942)
chr1 (67-117)||(8017764-8017814)
chr1 (17-67)||(9371746-9371796)
[»] chr2 (2 HSPs)
chr2 (1-67)||(31120373-31120439)
chr2 (1-67)||(15587970-15588036)
[»] chr6 (2 HSPs)
chr6 (67-117)||(21133709-21133759)
chr6 (9-67)||(18617166-18617224)
[»] chr7 (1 HSPs)
chr7 (15-67)||(10699381-10699433)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 223
Target Start/End: Complemental strand, 16668544 - 16668388
Alignment:
Q  67 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaatgtccgactta 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || |||||||||||| |||    
T  16668544 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagatggtatttcctattctgttttccatttgattcaaaatgtccgattta 16668445  T
Q  167 accctccacaatttgtcaaactactatcaactctagatgactgtgcatggcatattc 223  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||||||||    
T  16668444 accctccataatttgtcaaactactatcaactctaggcgactgtgcatggcatattc 16668388  T

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Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 68 - 223
Target Start/End: Original strand, 36575061 - 36575216
Alignment:
Q  68 ggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaatgtccgacttaa 167  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| ||||    
T  36575061 ggaaaatgttgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcattttctattccgttttccatttcacccaaaatgtccgatttaa 36575160  T
Q  168 ccctccacaatttgtcaaactactatcaactctagatgactgtgcatggcatattc 223  Q
    ||||||| ||| | |||||||||||||||||||||| |||| ||||||||||||||    
T  36575161 ccctccataatgtttcaaactactatcaactctagacgactctgcatggcatattc 36575216  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 14032500 - 14032562
Alignment:
Q  5 caactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 67  Q
    |||||||| || ||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  14032500 caactatgctggcaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 14032562  T

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Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 44516797 - 44516709
Alignment:
Q  67 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44516797 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatgagctggcatttcctattctgttttccatttcatccaaaa 44516709  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 32175883 - 32175942
Alignment:
Q  8 ctatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 67  Q
    ||||| |||||||||||||||  || | |||||||| |||||||||||||||||||||||    
T  32175883 ctatgctgacaccccaaaatattgtttgtcaaatacacctcattctatatattattaata 32175942  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 8017814 - 8017764
Alignment:
Q  67 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatga 117  Q
    ||||||||| ||||   |||||||||||||||||| |||||||||||||||    
T  8017814 aggaaaatgttgaacgacacgagagaattctcgtgtgtatcccgcgaatga 8017764  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 9371746 - 9371796
Alignment:
Q  17 caccccaaaataccgtatatcaaatactcctcattctatatattattaata 67  Q
    |||||||||||| ||| | |||||||| |||||| ||||||||||||||||    
T  9371746 caccccaaaatatcgtgtgtcaaatacacctcatcctatatattattaata 9371796  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31120439 - 31120373
Alignment:
Q  1 atctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 67  Q
    |||||||||||||||||||  | ||||||||| | |||||||| |||||| ||||||||||||||||    
T  31120439 atctcaactatgttgacacttctaaataccgtgtgtcaaatacccctcatcctatatattattaata 31120373  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15588036 - 15587970
Alignment:
Q  1 atctcaactatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 67  Q
    |||||||||||||||||||| ||||| | | | |||||||| | |||||| ||||||||||||||||    
T  15588036 atctcaactatgttgacaccacaaaacatcatgtatcaaatgcacctcatcctatatattattaata 15587970  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 21133709 - 21133759
Alignment:
Q  67 aggaaaatgctgaagtgcacgagagaattctcgtgcgtatcccgcgaatga 117  Q
    ||||||||||||||   |||||||||||||||||| |||||||||||||||    
T  21133709 aggaaaatgctgaacgacacgagagaattctcgtgtgtatcccgcgaatga 21133759  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 18617224 - 18617166
Alignment:
Q  9 tatgttgacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 67  Q
    ||||||| ||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  18617224 tatgttggcaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 18617166  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 10699433 - 10699381
Alignment:
Q  15 gacaccccaaaataccgtatatcaaatactcctcattctatatattattaata 67  Q
    ||||||||||||||  || | |||||||| |||||| ||||||||||||||||    
T  10699433 gacaccccaaaatattgtgtgtcaaatacacctcatcctatatattattaata 10699381  T

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