View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9793_low_26 (Length: 220)
Name: NF9793_low_26
Description: NF9793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9793_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 41042107 - 41042296
Alignment:
| Q |
17 |
aggacccaacgtatatataaatatactttctaccctcaaagtacgttattaaaataatttttttaggggtaatannnnnnnnnn-gaaaacataaaatta |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41042107 |
aggaccaaacgtatatataaatatactttctaccctcaaagtacgttattaaaataatttttttaggggtaatatatatttttttgaaaacataaaatta |
41042206 |
T |
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| Q |
116 |
agtgtattgaatggatattgtagatctgacagctcatacgataaatacaatttatcttgaactaaggacggtgttatctaaattaaagct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41042207 |
agtgtattgaatggatattgtagatctgacagctcatacgataaatacaatttatcttgaactaaggacggtgttatctaaattaaagct |
41042296 |
T |
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