View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9793_low_6 (Length: 380)
Name: NF9793_low_6
Description: NF9793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9793_low_6 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 36137837 - 36137485
Alignment:
| Q |
18 |
agtgttccccagtcgccagcagttgtaaaatctgttgatgacggcaggaactcagcgtgaaactctggtgctgaagatatgggatcaaccttgacgggat |
117 |
Q |
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| T |
36137837 |
agtgttccccagtcgccagcagttgtaaaatctgttgatgacggcaggaactcggcgtgaaactctggtgctgaagatatgggatcaacctcgacgggat |
36137738 |
T |
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| Q |
118 |
cagtagaaccaaacacccgttgcccgatttatccattgagaacaaaagattnnnnnnngacaacgacaaattgaaaggtgaatcggcacttgcgaagaag |
217 |
Q |
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| T |
36137737 |
cagtagaaccaaacacccgttgcatgatttatccattgagaacaaaagattaaaaaaagacaacgagaaattgaaaggtgaatcggcacttgcgaagaag |
36137638 |
T |
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| Q |
218 |
tagtgcgacaagttagtagcttttctacaggacattgtcaatgtgggaccagatcagattaattgcatgatcgacaagagacaagtgggtccatccctga |
317 |
Q |
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| T |
36137637 |
tagtgcaacaagttagtagcttttctacaggacattgtcaatgtgggaccagatcagattaattgcatgatcgacaagagacaagtgggtccatccctga |
36137538 |
T |
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| Q |
318 |
cgtggtgtgtttggatgatgacaatattgcaataggtgaatgtagagcctttg |
370 |
Q |
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| T |
36137537 |
cgtggtgcgtttggatgatgacaatattgcaataggtgaatgtagagcctttg |
36137485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 36137141 - 36137330
Alignment:
| Q |
96 |
atgggatcaaccttgacgggatcagtagaaccaaacacccgttg-cccgatttatccattgagaacaaaagattnnnnnnngacaacgacaaattgaaag |
194 |
Q |
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| T |
36137141 |
atgggttcaaccttaacaggatcagtagaactaaatacccattgccccgatttatcaagtgagaacaaaaaattgataaaagagaacgagaaattgagct |
36137240 |
T |
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| Q |
195 |
gtgaatcggcacttgcgaagaagtagtgcgacaagttagtagcttttctacaggacattgtcaatgtgggaccagatcagattaattgcat |
285 |
Q |
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| T |
36137241 |
gtgaattggcacgtg-aaagaagcagtgcagcgagttggtagcttttctacgggatactgtcaatgtgggacatgatcaggttaactgcat |
36137330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 143 - 307
Target Start/End: Complemental strand, 41340156 - 41339989
Alignment:
| Q |
143 |
gatttatccattgagaacaaaagattnnnnnnngacaacgacaaattgaaaggtgaatcggcacttgcgaagaagtagtgcgacaagttagtagcttttc |
242 |
Q |
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| T |
41340156 |
gatttatccagtgagaacaaaagattaaaaaaagacaacgataaattgaccggtgaattggcacttgcgaagaagtggtgcgacaagttagtagcttttc |
41340057 |
T |
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| Q |
243 |
tacaggacattgtcaatgtgggaccag---atcagattaattgcatgatcgacaagagacaagtgggt |
307 |
Q |
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| T |
41340056 |
tacaggacattgtcaatgtgggatcagatcatcagattaaccgcatcatcgacaaaggacaagtgggt |
41339989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 331 - 370
Target Start/End: Complemental strand, 41339980 - 41339941
Alignment:
| Q |
331 |
gatgatgacaatattgcaataggtgaatgtagagcctttg |
370 |
Q |
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| T |
41339980 |
gatgatgacaacattgcaataggtgaatgtagagcctttg |
41339941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 370
Target Start/End: Original strand, 23023 - 23093
Alignment:
| Q |
300 |
aagtgggtccatccctgacgtggtgtgtttggatgatgacaatattgcaataggtgaatgtagagcctttg |
370 |
Q |
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| T |
23023 |
aagtgggtccaaccttgacgtggtgcgttttgactatgacgatattgcaataggcgaatcttgagcctttg |
23093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 33493089 - 33493019
Alignment:
| Q |
33 |
ccagcagttgtaaaatctgttgatgacggcaggaactcagcgtgaaactctggtgctgaagatatgggatc |
103 |
Q |
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| T |
33493089 |
ccagcagctgtaagatctgttggagttggcgggaactcaccttcaaactctggtgctgaagatatgggatc |
33493019 |
T |
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