View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9794_high_14 (Length: 310)
Name: NF9794_high_14
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_14 |
 | |
|
| [»] scaffold0059 (3 HSPs) |
| | |
|
| [»] scaffold0013 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0059 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 212
Target Start/End: Original strand, 5637 - 5845
Alignment:
| Q |
4 |
ttttaagtgatgggtttataatttgtttgtttagaaaacctaatagaactatagtaaaataaataaaattgattttaccagagagataagtttgtcgcga |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||||||||| ||| || |
|
|
| T |
5637 |
ttttaagtgatgggtttataatttgtttgtttagaaaacctaatagaactatagtgaaataaataaaattgagtttagcaaagagataagtttatcggga |
5736 |
T |
|
| Q |
104 |
ttaaacttcataaaactattgcatatgcactctcatgattaaaatcaccgatcatagttttattcgatattttcacgtattgctcgacaaatgttattta |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
5737 |
ttaaacttcataaaactattgcatatgcactctcatgattagaaccaccgatcttagttttattcgatattttcacatattgctcgacaaacgttattta |
5836 |
T |
|
| Q |
204 |
tgtctaaat |
212 |
Q |
| |
|
||||||||| |
|
|
| T |
5837 |
tgtctaaat |
5845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 6207 - 6297
Alignment:
| Q |
210 |
aattggtttgctgtccatccttgatttatcaagaaatgttgttaatccaccttcaatctttgccaattggtgttccctcctctttctctct |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||| |
|
|
| T |
6207 |
aattggtttgctatccatccttgatttatcaagaaatgttgttaatccaccttcaatccttcccaattgatgttccttcctctttctctct |
6297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 210 - 301
Target Start/End: Original strand, 164 - 255
Alignment:
| Q |
210 |
aattggtttgctgtccatccttgatttatcaagaaatgttgttaatccaccttcaatctttgccaattggtgttccctcctctttctctctg |
301 |
Q |
| |
|
||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |
|
|
| T |
164 |
aattggtttgccatcaatccttgatttctcaagaaatgttgttaatccaccttcaatccttgccaattggtgttccttcctatttctctctg |
255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 239764 - 239555
Alignment:
| Q |
3 |
attttaagtgatgggtttataatttgtttgtttagaaaacctaatagaactatagtaaaataaataaaattgattttaccagagagataagtttgtcgcg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||| | |
|
|
| T |
239764 |
attttaagtgatgggtttataatttgtttgtttagaaaacctaatagaactatagtgaaataaatataattgagtttatcagagagataagtttgtcggg |
239665 |
T |
|
| Q |
103 |
attaaacttcataaaactattgcatatgcactctcatgattaaaatcaccgatcatagttttattcgatattttcacgtattgctcgacaaatgttattt |
202 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||| |||||| ||||||| ||| |||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
239664 |
attaaacttcatcaacctattgcatatgtactctcctgattagaatcaccaatccaagttttattcgatatttttacgtattgctcgacaggtgttattt |
239565 |
T |
|
| Q |
203 |
atgtctaaat |
212 |
Q |
| |
|
|||||||||| |
|
|
| T |
239564 |
atgtctaaat |
239555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 239193 - 239103
Alignment:
| Q |
210 |
aattggtttgctgtccatccttgatttatcaagaaatgttgttaatccaccttcaatctttgccaattggtgttccctcctctttctctct |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |||||||||||||| |
|
|
| T |
239193 |
aattggtttgctatccatccttgatttatcaagaaatgttgttaatccaccttcaatccttcccaattgatgttccttcctctttctctct |
239103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 1216304 - 1216347
Alignment:
| Q |
169 |
gatattttcacgtattgctcgacaaatgttatttatgtctaaat |
212 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1216304 |
gatattctcacgtattgctcgacaaacattatttatgtctaaat |
1216347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 13105379 - 13105423
Alignment:
| Q |
168 |
cgatattttcacgtattgctcgacaaatgttatttatgtctaaat |
212 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
13105379 |
cgatattttcacgtattgctcggcaaacattattcatgtctaaat |
13105423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 44785603 - 44785647
Alignment:
| Q |
168 |
cgatattttcacgtattgctcgacaaatgttatttatgtctaaat |
212 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
44785603 |
cgatattttcacgtattgctcggcaaacattattcatgtctaaat |
44785647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University