View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9794_high_16 (Length: 281)
Name: NF9794_high_16
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_16 |
 | |
|
| [»] chr4 (13 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 3749506 - 3749232
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749506 |
gattcttccctaacaagactagagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
3749407 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749406 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacatgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaa |
3749307 |
T |
|
| Q |
207 |
aaatctccatggcttttttccacactactcaatgagtgaatctcttcaaagaattagagtaagtaacacaaactt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3749306 |
aaatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaactt |
3749232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 5858618 - 5858344
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||| ||||| || |||||||||| ||||||||||||| |
|
|
| T |
5858618 |
gattcttccctaacaaaactagagaacctatcagtcattattcttgatgagaactatttttcatccccagttcctgaaacatttgcaaattttaaaaact |
5858519 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaa |
206 |
Q |
| |
|
|||| |||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||| |||| |||||||| ||| |||| | |
|
|
| T |
5858518 |
tgactaccctcagtcttgcattttgtgcattatccggtacatttccacagaagatctttcagattggaacattgtctgtgattgacttattttccaacga |
5858419 |
T |
|
| Q |
207 |
aaatctccatggcttttttccacactactcaatgagtgaatctcttcaaagaattagagtaagtaacacaaactt |
281 |
Q |
| |
|
|||||||| ||| | |||||| |||||||| | |||||||||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
5858418 |
aaatctccgtggttcatttccaaactactcactaagtgaatctcttcatagaattagagtgagtgacacaaactt |
5858344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 5582983 - 5583129
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||| | |
|
|
| T |
5582983 |
gattcttccctaacaagactaaagaacctatcagtcattattcttgatgggaacaatttttcatccccagtgccacaaacattttccaatttcaaaaaat |
5583082 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttcca |
153 |
Q |
| |
|
| ||||||||||||||||| ||||| |||||| |||| ||||||| |
|
|
| T |
5583083 |
taaccaccctcagtcttgcatcttgtggattgactggtaaatttcca |
5583129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 281
Target Start/End: Complemental strand, 5565354 - 5565080
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5565354 |
gattcttccctttcaaaactagagaacctatcagtcattattcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacc |
5565255 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaa |
206 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||| |||| |||| ||||||||| | ||| | |
|
|
| T |
5565254 |
tgaccaccctcagtcttgtagattgtgggttgaccggtacatttccacaaaatatttttcagattgaaacattgtctgttattgacttatcatttaacta |
5565155 |
T |
|
| Q |
207 |
aaatctccatggcttttttccacactactcaatgagtgaatctcttcaaagaattagagtaagtaacacaaactt |
281 |
Q |
| |
|
||||||||||| | || ||| |||||||| | |||||||||||||| || |||| ||| ||| |||||||||| |
|
|
| T |
5565154 |
caatctccatggttcattcccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaactt |
5565080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 5570778 - 5570952
Alignment:
| Q |
9 |
ttcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttg |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||| | |||||| |||||||| ||||||||||||| | |
|
|
| T |
5570778 |
ttcttccctaacaagactaaagaacctatcagtcattattcttgatgggaactatttctcatccctagtgccagaaacattttccaattttaaaaaacta |
5570877 |
T |
|
| Q |
109 |
accaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtca |
183 |
Q |
| |
|
||||||||||||||| | ||||| |||||| ||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
5570878 |
accaccctcagtctttcatcttgtggattgacaggtacatttccacaaaatatctttcaaattggaacattgtca |
5570952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 7 - 254
Target Start/End: Complemental strand, 5605672 - 5605424
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
|||||||||||| |||| |||||||| |||| | |||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5605672 |
gattcttccctagcaaggttagagaacttatctgtcattcttcttgatgggaacaatttttcatccccagtgccagaaacatttgccaattttaaaaacc |
5605573 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaa |
206 |
Q |
| |
|
| |||||||||| |||| ||||| |||||| || |||||||||| || ||||| ||| ||||||||||| ||||||||| | | ||||| |
|
|
| T |
5605572 |
taaccaccctcaatcttaacgattgtggattgactggaacatttccacaaaatatatttcaaattagaacactgtcagatattgacttatctgacaaccc |
5605473 |
T |
|
| Q |
207 |
aaatctccatgg-cttttttccacactactcaatgagtgaatctcttca |
254 |
Q |
| |
|
|| || ||||| ||||||||| |||||||| | |||||||||||||| |
|
|
| T |
5605472 |
taaccttcatggttttttttccagactactcacttagtgaatctcttca |
5605424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 5852659 - 5852834
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
|||||||||||| ||| |||| ||||||||||| ||||||||||||| ||||||||||||| || || || || |||||||||| |||||| ||||| |
|
|
| T |
5852659 |
gattcttccctatcaaaactaaggaacctatcagtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgctaattttcaaaacc |
5852758 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtc |
182 |
Q |
| |
|
|||||||||| |||||| | ||||| |||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5852759 |
tgaccacccttagtctttcagattgtggattgactggtacatttccacagaagatctttcagattggaacactgtc |
5852834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 5886000 - 5886270
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||| | ||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5886000 |
gattcctccctttcaaaactagagaacctatcggtcattattcttggcgagaacaatttttcatccccagtgccacaaacatttgccaattttaaaaacc |
5886099 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaa |
206 |
Q |
| |
|
| |||||||||| |||| ||| | |||||| | ||||||||||| ||||| || ||| |||||||||||| ||||||||| | | ||||| |
|
|
| T |
5886100 |
taaccaccctcaatcttcaaaattgcggattgacagatacatttccacaaaagatcttccaaattagaacactgtcaattattgacttatctgacaaccc |
5886199 |
T |
|
| Q |
207 |
aaatctccatggcttttttccacactactcaatgagtgaatctcttcaaagaattagagtaagtaacacaa |
277 |
Q |
| |
|
|||||||||| ||||| || | |||||| | ||||||| |||||| || |||||||| |||||||||| |
|
|
| T |
5886200 |
caatctccatgtttttttccctgattactcacttagtgaatatcttcatagcattagagtgagtaacacaa |
5886270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 5847785 - 5847901
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||| |||||| || |||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
5847785 |
gattcttccctaacaagactagagaacctgacggtcattgttcttggtgagaacaacttttcatccccagtgccacaaacatttgccaattttaaaaacc |
5847884 |
T |
|
| Q |
107 |
tgaccaccctcagtctt |
123 |
Q |
| |
|
| |||||||||| |||| |
|
|
| T |
5847885 |
taaccaccctcaatctt |
5847901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 254
Target Start/End: Original strand, 5894845 - 5895092
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||| |||||||||| || | |||||||||||||| || |||| ||||||||||||||||||||||| |
|
|
| T |
5894845 |
gattcttccctatcaagactacagaacctgtcagtcattattctttatcgaaacaatttttcatcctcattgccagaaacatttgccaattttaaaaacc |
5894944 |
T |
|
| Q |
107 |
tgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaa |
206 |
Q |
| |
|
| |||||||||| |||| |||| ||||| |||||||||||||| ||||| || ||| | ||||||||| ||||||||| | | |||| |
|
|
| T |
5894945 |
taaccaccctcaatcttcgaaagtgtggattgatcggtacatttccacaaaagatcttccaaattaggacactgtcagttattgacttatctggcaaccc |
5895044 |
T |
|
| Q |
207 |
aaatctccatggcttttttccacactactcaatgagtgaatctcttca |
254 |
Q |
| |
|
|||||||| | ||||||||| |||||||| | |||||||||||||| |
|
|
| T |
5895045 |
caatctccaagttttttttccagactactcacttagtgaatctcttca |
5895092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 154
Target Start/End: Complemental strand, 5553764 - 5553616
Alignment:
| Q |
6 |
agattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaac |
105 |
Q |
| |
|
||||||||||||| ||| |||| | |||||||| | ||||||||||||| ||||||||||||| || || || || ||||||||||||||||| ||||| |
|
|
| T |
5553764 |
agattcttccctatcaaaactaaaaaacctatcggtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgccaattttcaaaac |
5553665 |
T |
|
| Q |
106 |
ttgaccaccctcagtcttgcgctttgtgaattgaccggtacatttccac |
154 |
Q |
| |
|
|||||||||| |||||| | ||||| ||| || ||||||||||||| |
|
|
| T |
5553664 |
ctgaccacccttagtcttacatcttgtggattaacaggtacatttccac |
5553616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 5538926 - 5539030
Alignment:
| Q |
20 |
caagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcag |
119 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||||| ||||||||||| || |||||||| |||||||| ||||||| | ||| ||||| ||||| || |
|
|
| T |
5538926 |
caagactagagaatctatcgatcattattctcgatggaaacaatttttcttccccagtgcctgaaacattttccaatttcagaaatttgactacccttag |
5539025 |
T |
|
| Q |
120 |
tcttg |
124 |
Q |
| |
|
||||| |
|
|
| T |
5539026 |
tcttg |
5539030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 194
Target Start/End: Complemental strand, 5559528 - 5559376
Alignment:
| Q |
42 |
cattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtgaattgacc |
141 |
Q |
| |
|
||||||||||||||| ||||||||||| || || ||||| |||||||| ||||||| | ||| ||||| ||||| |||||||| |||| |||||| |
|
|
| T |
5559528 |
cattattcttgatggaaacaatttttcttccccggtgcctgaaacattttccaatttcagaaatttgacaacccttagtcttgcagcttgtagattgact |
5559429 |
T |
|
| Q |
142 |
ggtacatttccacgtgcaatctttcagattggaacactgtcaactattgactt |
194 |
Q |
| |
|
| ||||||||||| | ||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
5559428 |
gatacatttccacataagatcttccaaattggaacattgtcatttattgactt |
5559376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 277
Target Start/End: Complemental strand, 1483456 - 1483339
Alignment:
| Q |
160 |
atctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatctccatggcttttttccacactactcaatgagtgaatctcttcaaagaa |
259 |
Q |
| |
|
||||||||||||| | |||||||| ||| ||||| | | ||||||| |||| ||||| | |||||| |||||||| | ||||||||||||| |||| |
|
|
| T |
1483456 |
atctttcagattgcagcactgtcatttatcgacttatattacaacaacgatcttcatggttcatttccaaactactcacttagtgaatctcttcgtagaa |
1483357 |
T |
|
| Q |
260 |
ttagagtaagtaacacaa |
277 |
Q |
| |
|
||||||| ||| |||||| |
|
|
| T |
1483356 |
ttagagttagttacacaa |
1483339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 1485808 - 1485703
Alignment:
| Q |
7 |
gattcttccctaacaagactagagaacctatcagacattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaact |
106 |
Q |
| |
|
||||| ||||| ||| ||||||||||||| | ||||||||||||| ||||||| ||||||| ||| | || |||||||| |||||||||||||| |
|
|
| T |
1485808 |
gattcctccctttcaaaactagagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatttaccaattttaaaaacc |
1485709 |
T |
|
| Q |
107 |
tgacca |
112 |
Q |
| |
|
|||||| |
|
|
| T |
1485708 |
tgacca |
1485703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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