View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_high_17 (Length: 280)
Name: NF9794_high_17
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 5562428 - 5562697
Alignment:
| Q |
14 |
agatcacgtggccattgggcagtatagtttgaaactttgaaatttgagtttgaaaggcaagtcagcatgggtcaaaga----cacacacattcatcacgt |
109 |
Q |
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| T |
5562428 |
agatcacgtagccattgggcagtatagtttgaaactttgaaatttgagtttgaaaggcaagtcagcatgggtcaaagacacccacccacattcatcacgt |
5562527 |
T |
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| Q |
110 |
gatcacattgggtatggtcgtggataataagtgaactttttattatcctcggcaggcctaaaattaggtatttcgtggcccataagcat-cccgatttat |
208 |
Q |
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| T |
5562528 |
gatcacattgggtatggtcgtggataataagtgaac--tttattatcctcggcaggcctaaaattaggtatttcgtggcccataagcatccccgatttat |
5562625 |
T |
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| Q |
209 |
ggaaaaagcaagtactctgtttcaaggtcagtgtcctactcttgtccccaaacgagccaatgtcacctctat |
280 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5562626 |
ggaaaaagtaagtactctgtttcaaggtcagtgtcctactcttgtcccaaaacgagccaatgtcacctctat |
5562697 |
T |
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