View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_high_2 (Length: 648)
Name: NF9794_high_2
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 15 - 632
Target Start/End: Original strand, 10844626 - 10845243
Alignment:
| Q |
15 |
gacatcactttttgtagtcaagtgacctgtaatgtaaacattcattgttgcattagagacatgtaaactattagagctatcaattgtggtctggttcaat |
114 |
Q |
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| T |
10844626 |
gacatcactttttgtagtcaagtgacctgtaatgtaaacattcattgttgcattagagacatgtaaactattagagctatcaattgtggtctggttcaat |
10844725 |
T |
|
| Q |
115 |
gtgccggtcagatgaacctgtaccggtcaaatatgcacctattttgtttaagcaattatacctgttgagatgtactctggggctgcatatccataagttc |
214 |
Q |
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| T |
10844726 |
gtgccggtcagatgaacctgtaccggtcagatatgcacctattttgtttaagcaattatacctgttgagatgtactctggggctgcatatccataagttc |
10844825 |
T |
|
| Q |
215 |
ccataactctggttgtaacatgtgactttgatccttctggtcccatctttgcaagtccaaaatccgataattttgctgtgaagtcctatttcaaacagaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
10844826 |
ccataactctggttgtaacatgtgactttgatccttctggtcccatctttgcaagtccaaaatctgataattttgctgtgaagtcctatttcaaatagaa |
10844925 |
T |
|
| Q |
315 |
ccacatgatgcatactatttgaatcttttatttgagtaataaaacaaagattaaattactacttactgaatcaagtaagacattggaagtcttgaaatct |
414 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10844926 |
ccacatgatgcatactatttgaatctttaatttgagtaataaaacaaagattaaattactacttactgaatcaagtaagacattggaagtcttgaaatct |
10845025 |
T |
|
| Q |
415 |
ctgtaaatgactggtttctcagctccatgcaagaaagaaaggcctttagcagcacctattgcaatttttattcttgtagcccaaggtagtgatgttagtc |
514 |
Q |
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| T |
10845026 |
ctgtaaatgactggtttctcagctccatgcaagaaagaaaggcctttagcagcacctattgcaatttttattcttgttgcccaaggtagtgatgttagtc |
10845125 |
T |
|
| Q |
515 |
ctgcaataacatgtaatgatctaatgatatgtgacatgcctcttttatttatgtattaaaataaacataagtgattatgatacatacttctaaacaagtg |
614 |
Q |
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|||||||||||||||||||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10845126 |
ctgcaataacatgtaatgatatgaggatatgtgacatgcctcatttatttatgtattaaaataaacataagtgattatgatacatacttctaaacaagtg |
10845225 |
T |
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| Q |
615 |
attctccaagcttcctct |
632 |
Q |
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|||||||||||||||||| |
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| T |
10845226 |
attctccaagcttcctct |
10845243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 600 - 629
Target Start/End: Complemental strand, 41448643 - 41448614
Alignment:
| Q |
600 |
acttctaaacaagtgattctccaagcttcc |
629 |
Q |
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| T |
41448643 |
acttctaaacaagtgattctccaagcttcc |
41448614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 492
Target Start/End: Original strand, 5793577 - 5793629
Alignment:
| Q |
440 |
catgcaagaaagaaaggcctttagcagcacctattgcaatttttattcttgta |
492 |
Q |
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| T |
5793577 |
catgcaagaaagaaagacctagtgcagcacatattgcaattttcattcttgta |
5793629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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