View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_high_22 (Length: 257)

Name: NF9794_high_22

Description: NF9794

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF9794_high_22

[»] chr8 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 239; E-Value: 1e-132

Query Start/End: Original strand, 1 - 239

Target Start/End: Original strand, 36207016 - 36207254

Alignment:

Q	1	gtagcatgagtgactgtcttatcattgttcttttcattttgggcgtgttgctgactatattgaagggactctaggagagaaacgatcaagtacaaatagg	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36207016	gtagcatgagtgactgtcttatcattgttcttttcattttgggcgtgttgctgactatattgaagggactctaggagagaaacgatcaagtacaaatagg	36207115	T

Q	101	tggagccatagaacagaactgaccaatagaaacccaaaatagtataaatcacaataaccagaaccttcccagtgaagatgaactttaccggagaaaaaag	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36207116	tggagccatagaacagaactgaccaatagaaacccaaaatagtataaatcacaataaccagaaccttcccagtgaagatgaactttaccggagaaaaaag	36207215	T

Q	201	atcgatatcgaaagttccaagtagaacccagcaaaaaac	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36207216	atcgatatcgaaagttccaagtagaacccagcaaaaaac	36207254	T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 1 - 47

Target Start/End: Complemental strand, 10989274 - 10989228

Alignment:

Q	1	gtagcatgagtgactgtcttatcattgttcttttcattttgggcgtg	47	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	10989274	gtagcataagtgactaccttatcattgttcttttcagtttgggcgtg	10989228	T

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