View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_high_23 (Length: 255)
Name: NF9794_high_23
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 51499186 - 51499426
Alignment:
| Q |
1 |
tttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctggacaggttttaattcaata |
100 |
Q |
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| T |
51499186 |
tttatttgcagggtaaagcaatttttgctagtggaagcccatttgatcctgttgaatatgaaggaaaagtttttgttcctggacaggttttaattcaata |
51499285 |
T |
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| Q |
101 |
cttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgattttaatattttgttttgctgcaatgcaatttagtccaacaatgc |
200 |
Q |
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| T |
51499286 |
cttaacaaagcattttctttttcaacagacatacattaccaaaattagtgactgactttaatattttgttttgctgcaatgcaatttagtccaacaatgc |
51499385 |
T |
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| Q |
201 |
ttacatttttcccggatttggtttgggtttgatcatctctg |
241 |
Q |
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| T |
51499386 |
ttacatttttcccggatttggtttgggtttgatcatctctg |
51499426 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 43206023 - 43205983
Alignment:
| Q |
188 |
agtccaacaatgcttacatttttcccggatttggtttgggt |
228 |
Q |
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| T |
43206023 |
agtccaacaatgcttacattttcccaggctttggtttgggt |
43205983 |
T |
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