View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_high_24 (Length: 253)
Name: NF9794_high_24
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 41879610 - 41879389
Alignment:
| Q |
18 |
ccgttctattgggttttcggccataagatcatcatccaacaatgcatatccaatgtttgtttgatatggatctgccagtattaccaatcaaaatcgtagc |
117 |
Q |
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| T |
41879610 |
ccgttctattgggttttcggccataagatcatcatccaacaatgcatatccaatgtttgtttgatatggatctgccagtattaccaatcaaaatcgtagc |
41879511 |
T |
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| Q |
118 |
tatgcatatttatatttagttataacgtacaccactgaagactgaagagaaaaaattgcatatttgcaagtccactcccccactaaatccttctcacgcg |
217 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41879510 |
tatgcata------tttagttataacgtacaccactgaagactgaagagaaaaaattgcatatttgcaagtccac-cccccactaaatccttctcacgcg |
41879418 |
T |
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| Q |
218 |
caccccttctcatttgttacccctacgtc |
246 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41879417 |
caccccttctcatttgttacccctacgtc |
41879389 |
T |
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