View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_high_28 (Length: 242)

Name: NF9794_high_28
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9794_high_28
NF9794_high_28
[»] chr6 (13 HSPs)
chr6 (1-227)||(33330140-33330366)
chr6 (1-227)||(33335637-33335863)
chr6 (1-227)||(16838908-16839123)
chr6 (1-227)||(6005581-6005799)
chr6 (1-227)||(5343641-5343857)
chr6 (1-227)||(6438663-6438876)
chr6 (1-227)||(28155278-28155492)
chr6 (1-224)||(22010396-22010615)
chr6 (1-227)||(14737273-14737498)
chr6 (1-77)||(14742133-14742209)
chr6 (1-224)||(11857141-11857360)
chr6 (157-227)||(14742290-14742358)
chr6 (157-227)||(28184668-28184739)
[»] chr3 (16 HSPs)
chr3 (1-227)||(2676782-2677008)
chr3 (1-227)||(2672626-2672852)
chr3 (5-227)||(24968271-24968493)
chr3 (1-227)||(18656597-18656821)
chr3 (1-227)||(8512381-8512620)
chr3 (1-227)||(8517261-8517500)
chr3 (1-227)||(32475648-32475864)
chr3 (1-227)||(32480506-32480722)
chr3 (1-80)||(28503526-28503605)
chr3 (14-81)||(22172901-22172968)
chr3 (2-80)||(28501360-28501438)
chr3 (157-224)||(22173048-22173113)
chr3 (15-80)||(8738743-8738808)
chr3 (15-80)||(9090981-9091046)
chr3 (157-210)||(28503675-28503726)
chr3 (157-210)||(7167479-7167531)
[»] chr1 (12 HSPs)
chr1 (1-227)||(43988156-43988383)
chr1 (1-227)||(39445662-39445875)
chr1 (1-227)||(25439606-25439818)
chr1 (1-227)||(25444799-25445011)
chr1 (1-227)||(1054721-1054934)
chr1 (1-227)||(44023584-44023796)
chr1 (1-80)||(41390900-41390979)
chr1 (1-80)||(41398555-41398634)
chr1 (1-80)||(24787033-24787110)
chr1 (157-227)||(41390744-41390812)
chr1 (157-227)||(41398399-41398467)
chr1 (1-69)||(24793855-24793921)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-227)||(1946-2172)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-227)||(148651-148877)
[»] chr5 (19 HSPs)
chr5 (1-227)||(31396697-31396912)
chr5 (1-227)||(31401554-31401769)
chr5 (1-227)||(2785539-2785755)
chr5 (1-227)||(33791480-33791696)
chr5 (1-227)||(33768348-33768564)
chr5 (1-227)||(28807283-28807496)
chr5 (1-227)||(37556332-37556544)
chr5 (1-227)||(37561154-37561366)
chr5 (1-227)||(15044849-15045073)
chr5 (1-76)||(1456845-1456920)
chr5 (1-75)||(31180568-31180642)
chr5 (1-224)||(27449981-27450202)
chr5 (157-224)||(1457015-1457080)
chr5 (157-224)||(27445137-27445202)
chr5 (157-224)||(43592446-43592511)
chr5 (157-224)||(43598891-43598956)
chr5 (157-224)||(43604383-43604448)
chr5 (157-224)||(43609875-43609940)
chr5 (1-76)||(27445285-27445359)
[»] chr8 (16 HSPs)
chr8 (1-227)||(35745555-35745771)
chr8 (1-227)||(10683946-10684185)
chr8 (1-227)||(39784532-39784745)
chr8 (1-223)||(25327871-25328070)
chr8 (110-223)||(25328085-25328196)
chr8 (1-79)||(7289635-7289713)
chr8 (1-80)||(1261625-1261702)
chr8 (1-78)||(6311651-6311728)
chr8 (15-80)||(18852847-18852912)
chr8 (1-80)||(4759742-4759819)
chr8 (157-224)||(7289779-7289844)
chr8 (1-80)||(30655997-30656074)
chr8 (17-80)||(18870243-18870306)
chr8 (1-79)||(10688806-10688884)
chr8 (157-210)||(18852978-18853029)
chr8 (1-69)||(36979741-36979806)
[»] scaffold0197 (2 HSPs)
scaffold0197 (1-227)||(18871-19086)
scaffold0197 (1-227)||(13991-14230)
[»] chr7 (15 HSPs)
chr7 (1-227)||(24265884-24266123)
chr7 (1-227)||(16880237-16880453)
chr7 (1-227)||(24261028-24261244)
chr7 (1-227)||(16885093-16885308)
chr7 (5-227)||(21811950-21812160)
chr7 (105-227)||(19992476-19992597)
chr7 (1-227)||(31109278-31109505)
chr7 (1-209)||(4873310-4873514)
chr7 (1-80)||(24024026-24024103)
chr7 (1-224)||(12397078-12397298)
chr7 (157-224)||(12406498-12406563)
chr7 (1-53)||(12406598-12406650)
chr7 (17-75)||(20357231-20357289)
chr7 (15-80)||(24789647-24789712)
chr7 (1-68)||(1533112-1533177)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-227)||(176657-176898)
[»] chr2 (8 HSPs)
chr2 (2-227)||(19344585-19344801)
chr2 (1-227)||(19349443-19349660)
chr2 (1-227)||(32246951-32247166)
chr2 (1-80)||(39811684-39811763)
chr2 (1-77)||(9296070-9296144)
chr2 (157-227)||(39811842-39811910)
chr2 (1-70)||(14291850-14291917)
chr2 (1-70)||(11098595-11098662)
[»] chr4 (11 HSPs)
chr4 (1-227)||(5732827-5733039)
chr4 (1-227)||(45347524-45347738)
chr4 (1-227)||(3814186-3814399)
chr4 (1-227)||(45357005-45357218)
chr4 (1-227)||(18855889-18856102)
chr4 (1-227)||(9228893-9229115)
chr4 (1-227)||(9224106-9224328)
chr4 (1-80)||(18712462-18712541)
chr4 (1-79)||(56141719-56141797)
chr4 (157-224)||(51520624-51520689)
chr4 (17-70)||(29761002-29761055)
[»] scaffold0464 (1 HSPs)
scaffold0464 (1-227)||(525-738)
[»] scaffold0135 (1 HSPs)
scaffold0135 (1-227)||(34761-34983)
[»] scaffold0355 (3 HSPs)
scaffold0355 (1-76)||(3544-3619)
scaffold0355 (157-227)||(3702-3770)
scaffold0355 (174-227)||(9514-9565)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33330140 - 33330366
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33330140 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 33330239  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  33330240 agagaacttaagagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaa 33330339  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||    
T  33330340 tcaccttgggatttagggttcatagtg 33330366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33335637 - 33335863
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33335637 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcatgtgcttttttgaagacaaccttaagacaaccttg 33335736  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  33335737 agagaacttaagagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaa 33335836  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||    
T  33335837 tcaccttgggatttagggttcatagtg 33335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16839123 - 16838908
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||           |    
T  16839123 gtgacacgatctagggaaatcgtgacacgatttcttcagggcaggactagtatataaagtgttcttgtgcttttttggagagaacctt-----------g 16839035  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  16839034 agagagcttaagagagaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaa 16838935  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||    
T  16838934 tcaccttgggatttagggttcatagtg 16838908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6005799 - 6005581
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgctttttt--gaagacaaccttaagacaacct 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| | ||||||||||          
T  6005799 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgctttttttggaaaaaaaccttaaga------ 6005706  T
Q  99 tgagagagctcaagagagataacttggaggtcaaagatggg-atcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattg 197  Q
         ||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  6005705 -----gagcttaagagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattg 6005611  T
Q  198 taatcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||||  ||||||||||||    
T  6005610 taatcaccttgggattatgggttcatagtg 6005581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5343857 - 5343641
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||  |||||||          |  |||||||    
T  5343857 gtgacacgatctagggaaatcgtggcacgatttcttcagggctggactagtatataaagtgttcttgtgctcatttgaag----------gttaaccttg 5343768  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  5343767 agagaacttaagagagaaaacttggatatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaa 5343668  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||  ||||||||||||    
T  5343667 tcaccttgggattatgggttcatagtg 5343641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6438876 - 6438663
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||  ||||||||||||||||||||||||||||||||||            
T  6438876 gtgacacgatctagggaaatcgtgacacgatttcttcagggaaggactagtatatattgtgttcttgtgcttttttgaagacaaccttaaga-------- 6438785  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       ||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  6438784 ---gagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 6438690  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  6438689 tcaccttgggattttgggttcatagtg 6438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28155278 - 28155492
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||  ||||||||||||||||||||| | ||          |||||     
T  28155278 gtgacacgatctagggaaatcgtgacacgatttcttcaggggaggactagtatatattgtgttcttgtgcttttttgaaaaaaa----------acctta 28155367  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||| ||||||| |||||||| ||||||||||  ||||||||||||||| |||||||||||||||  || |||||||    
T  28155368 agagaacttaagagagaaaacttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaa--aacattgtaa 28155465  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||    
T  28155466 tcaccttgggatttagggttcatagtg 28155492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 22010396 - 22010615
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |   ||||||||| ||  |||||||||||||||||||||||  | |||||||  | ||||    
T  22010396 gtgacacgatctagggaaatcgtggcacgatttcttcagagggagactagtatatattgtgttcttgtgcttttttgaagaagaacttaaga-gagcttg 22010494  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       |||||  ||||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| ||||||||||  || |||||||    
T  22010495 tatgagct-tagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaa--aacattgtaa 22010591  T
Q  201 tcaccttgggatttagggttcata 224  Q
    |||||||||| |||||||||||||    
T  22010592 tcaccttgggttttagggttcata 22010615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14737273 - 14737498
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagaca---accttaagacaacc 97  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||||||||| ||| |   | |||||||  | |    
T  14737273 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttggagaaagagaacttaaga-gagc 14737371  T
Q  98 ttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattg 197  Q
    |||   |||||   |||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| ||||||||||  || ||||    
T  14737372 ttgtatgagct-ttgagagagaacttggataacaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaa--aacattg 14737468  T
Q  198 taatcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||| ||||||||||||||||    
T  14737469 taatcaccttgggttttagggttcatagtg 14737498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 14742133 - 14742209
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttg 77  Q
    ||||||||||||| ||||||||||||||||||||||||||| | ||||||||| ||  |||||||||||||||||||    
T  14742133 gtgacacgatctaaggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttg 14742209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 11857360 - 11857141
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagaca-accttaagacaacctt 99  Q
    |||||||||| | |||||||||||||||||||||||||| | | ||||||||| ||  ||||||||||||||||||   |  | | |||||||  | |||    
T  11857360 gtgacacgattt-gggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttactgggagaacttaaga-gagctt 11857263  T
Q  100 gagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
    ||  |||||  ||||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| ||||||||||  || ||||||    
T  11857262 gaatgagct-tagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaa--aacattgta 11857166  T
Q  200 atcaccttgggatttagggttcata 224  Q
    ||||||||||| |||||||||||||    
T  11857165 atcaccttgggttttagggttcata 11857141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 14742290 - 14742358
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||| ||||| ||||||||||||||||    
T  14742290 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcactttgggttttagggttcatagtg 14742358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 28184739 - 28184668
Alignment:
Q  157 tctttgatgagagtgtatcttaggtt-gggaaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    |||||| ||||||||| |||| |||| ||||||| || || |||||||||||||| ||||||||||||||||    
T  28184739 tctttgttgagagtgtctcttgggtttgggaaaaaaacatagtaatcaccttgggttttagggttcatagtg 28184668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2676782 - 2677008
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2676782 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagagaaccttaagacaaccttg 2676881  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  2676882 agagaacttaagagagaaaacttggaggtcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaa 2676981  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||    
T  2676982 tcaccttgggatttagggttcatagtg 2677008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 2672626 - 2672852
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2672626 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagagaaccttaagacaaccttg 2672725  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  2672726 agagaacttaagagagaaaacttggaggtcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaa 2672825  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||| |||||||||||    
T  2672826 tcaccttgggatttaaggttcatagtg 2672852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 24968493 - 24968271
Alignment:
Q  5 cacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttgagag 104  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||      |||||||||| ||||||||    
T  24968493 cacgatctagggaaatcgtggcacgatttcttcagggcaagactagtatttaaagtgttcttgtgcttatttgaaagggggcttaagacaatcttgagag 24968394  T
Q  105 agctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcac 204  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  24968393 agctcaagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaatcac 24968294  T
Q  205 cttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||    
T  24968293 cttgggatttagggttcatagtg 24968271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18656821 - 18656597
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18656821 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 18656722  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||| ||||||| |||||||| ||||||||||  ||||||||||||||| |||||||||||||||  || |||||||    
T  18656721 agagaacttaagagagaaaacttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaa--aacattgtaa 18656624  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||| |||||| ||||||    
T  18656623 tcaccttgggattaagggtttatagtg 18656597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8512620 - 8512381
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag-------------acaacct 87  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||             |||||||    
T  8512620 gtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaaggtaaccttaagagacaacct 8512521  T
Q  88 taagacaaccttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaa 187  Q
    |||||||||||||||||     |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8512520 taagacaaccttgagaggttggaagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaa 8512421  T
Q  188 aacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    ||||| ||||||||||||||||||||  ||||||||||||    
T  8512420 aacaacattgtaatcaccttgggattatgggttcatagtg 8512381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8517500 - 8517261
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag-------------acaacct 87  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||             |||||||    
T  8517500 gtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaaggtaaccttaagagacaacct 8517401  T
Q  88 taagacaaccttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaa 187  Q
    |||||||||||||||||     |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8517400 taagacaaccttgagaggttggaagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaa 8517301  T
Q  188 aacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    ||||| ||||||||||||||||||||  ||||||||||||    
T  8517300 aacaacattgtaatcaccttgggattatgggttcatagtg 8517261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32475864 - 32475648
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||          |  |||||||    
T  32475864 gtgacacgatctagggaaatcgtggcacgatttcttctgggcaggactagtatttaaagtgttcttgtgctcatttgaag----------gttaaccttg 32475775  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  32475774 agagaacttaagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaa 32475675  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||| |||||||||  ||||||||||||    
T  32475674 tcatcttgggattatgggttcatagtg 32475648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32480722 - 32480506
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||          |  |||||||    
T  32480722 gtgacacgatctagggaaatcgtggcacgatttcttctaggcaggactagtatttaaagtgttcttgtgctcatttgaag----------gttaaccttg 32480633  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  32480632 agagaacttaagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaa 32480533  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||| |||||||||  ||||||||||||    
T  32480532 tcatcttgggattatgggttcatagtg 32480506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 28503526 - 28503605
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    |||||||||||| ||||||||||||||||||| |||||| | | ||||||||| ||  ||||||||||||||||||||||    
T  28503526 gtgacacgatcttgggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttttgaag 28503605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 22172901 - 22172968
Alignment:
Q  14 gggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaaga 81  Q
    |||||||||||||||||||||||||| | | ||||||||| ||  |||||||||||||||||||||||    
T  22172901 gggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaaga 22172968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 28501360 - 28501438
Alignment:
Q  2 tgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||| ||||||||||||||||||| |||||| | | ||||||||| ||  |||| |||||||||||||||||    
T  28501360 tgacacgatcttgggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgtacttgtgcttttttgaag 28501438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 22173048 - 22173113
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  22173048 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 22173113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 8738743 - 8738808
Alignment:
Q  15 ggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    |||||||||||||||||| |||||| | | | ||||||| ||  ||||||||||||||||||||||    
T  8738743 ggaaatcgtggcacgattgcttcagaggaagtctagtatatattgtgttcttgtgcttttttgaag 8738808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 9090981 - 9091046
Alignment:
Q  15 ggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    |||||||||||||||||| |||||| | | | ||||||| ||  ||||||||||||||||||||||    
T  9090981 ggaaatcgtggcacgattgcttcagaggaagtctagtatatattgtgttcttgtgcttttttgaag 9091046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 28503675 - 28503726
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttggg 210  Q
    |||||| ||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  28503675 tctttgttgagagtgtctcttgggttgggaaa--aatattgtaatcaccttggg 28503726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 7167531 - 7167479
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttggg 210  Q
    |||||| ||||||||| |||| ||||||||||| || |||||||||||||||||    
T  7167531 tctttgttgagagtgtctcttgggttgggaaaa-aacattgtaatcaccttggg 7167479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 43988156 - 43988383
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgc-ttttttgaagacaaccttaagacaacctt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||    
T  43988156 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgctcttgtgcattttttggagataaccttaagacaacctt 43988255  T
Q  100 gagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
    |||||| || |||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  43988256 gagagaacttaagagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 43988355  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||  ||||||||||||    
T  43988356 atcaccttgggattatgggttcatagtg 43988383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39445875 - 39445662
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||               
T  39445875 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatatattgtgttcttgtgcttttttgaagacaacctta----------- 39445787  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  39445786 agagagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 39445689  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  39445688 tcaccttgggattttgggttcatagtg 39445662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25439606 - 25439818
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||             |||||||||||     
T  25439606 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatttattgtgttcttgtgctttttg------------aagacaacctta 25439693  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  25439694 agagagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 25439791  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||    
T  25439792 tcaccttgggatttagggttcatagtg 25439818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 25444799 - 25445011
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||             |||||||||||     
T  25444799 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatttattgtgttcttgtgctttttg------------aagacaacctta 25444886  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  25444887 agagagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 25444984  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||    
T  25444985 tcaccttgggatttagggttcatagtg 25445011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1054721 - 1054934
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||  |||||||||||||||||||||||           |||||||     
T  1054721 gtgacacgatctagggaaatcgtgacacgatttcttcaggggaggactagtatatattgtgttcttgtgcttttttgaaga-----------caacctta 1054809  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  1054810 agagagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 1054907  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  1054908 tcaccttgggattttgggttcatagtg 1054934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 44023584 - 44023796
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||  ||||||||||||||||| || || ||||||||||            
T  44023584 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactggtatatattgtgttcttgtgcttttt-gaggataaccttaaga-------- 44023674  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       ||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  44023675 ---gagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 44023769  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  44023770 tcaccttgggattttgggttcatagtg 44023796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 41390979 - 41390900
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||||||||||||    
T  41390979 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaag 41390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 41398634 - 41398555
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||||||||||||    
T  41398634 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaag 41398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24787033 - 24787110
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||  |||||||||||||||||| |||||| | | ||||||||| ||  ||||||||||||||||||||||    
T  24787033 gtgacacgatct--ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttttgaag 24787110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 41390812 - 41390744
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  41390812 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcatagtg 41390744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 41398467 - 41398399
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  41398467 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcatagtg 41398399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 24793855 - 24793921
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtg 69  Q
    ||||||||||||  |||||||||||||||||| |||||| | | ||||||||| ||  |||||||||||    
T  24793855 gtgacacgatct--ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtg 24793921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 1946 - 2172
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||    
T  1946 gtgacacgatctagggaaatcgtgacacgatttcttcagggcaggactagtatataaagtgttcttgtgcttatttgaaggtaaccttaagacaaccttg 2045  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||     ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  2046 agaggttggaagagtgataacttggaggtcaaggaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaa 2145  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||  ||||||||||||    
T  2146 tcaccttgggattatgggttcatagtg 2172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 148651 - 148877
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||  ||||||||||||||||||    
T  148651 gtgacacgatctagggaaatcgtgacacgatttcttcagggcaggactagtatataaagtgttcttgtgcttatttgaaggtaaccttaagacaaccttg 148750  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||     ||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  148751 agaggttggaagagtgataacttggaggtcaaggaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaa 148850  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||  ||||||||||||    
T  148851 tcaccttgggattatgggttcatagtg 148877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31396697 - 31396912
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||           ||||||||    
T  31396697 gtgacacgatctagggtaatcgtgacacgatttcttcagggcaggacttgtatttaaagtgttcttgtgcttttttgaaga-----------caaccttg 31396785  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  31396786 agagagcttaagagagaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaa 31396885  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||  ||||||||||||    
T  31396886 tcaccttgggattatgggttcatagtg 31396912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31401554 - 31401769
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||           ||||||||    
T  31401554 gtgacacgatctagggtaatcgtgacacgatttcttcagggcaggacttgtatttaaagtgttcttgtgcttttttgaaga-----------caaccttg 31401642  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  31401643 agagagcttaagagacaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaaaacaacattgtaa 31401742  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||  ||||||||||||    
T  31401743 tcaccttgggattatgggttcatagtg 31401769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 2785755 - 2785539
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||            
T  2785755 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaaga-------- 2785664  T
Q  101 agagagctcaagagagataacttggaggtcaaagatggg-atcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
       ||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  2785663 ---gagcttaagagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 2785567  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||  ||||||||||||    
T  2785566 atcaccttgggattatgggttcatagtg 2785539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33791696 - 33791480
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||            
T  33791696 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaaga-------- 33791605  T
Q  101 agagagctcaagagagataacttggaggtcaaagatggg-atcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
       ||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  33791604 ---gagcttaagagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 33791508  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||  ||||||||||||    
T  33791507 atcaccttgggattatgggttcatagtg 33791480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33768564 - 33768348
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||            
T  33768564 gtgacacgatctagggaaatcgtggcacgatttcttcagggcatgactagtatttaaagtgttcttgtgcttttttggagataaccttaaga-------- 33768473  T
Q  101 agagagctcaagagagataacttggaggtcaaagatggg-atcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
       ||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  33768472 ---gagcttaagagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 33768376  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||   |||||||||||    
T  33768375 atcaccttgggattattggttcatagtg 33768348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28807283 - 28807496
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||| ||||||||||            
T  28807283 gtgacacgatctagggaactcgtggcacgatttcttcagggcaggactagtatatattatgttcttgtgcttttttgaagagaaccttaaga-------- 28807374  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       ||||| |||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||  || |||||||    
T  28807375 ---gagcttaagagagaaaacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaa--aacattgtaa 28807469  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  28807470 tcaccttgggattttgggttcatagtg 28807496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37556332 - 37556544
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||      ||    
T  37556332 gtgacacgatctagggaaatcatggcacgatttcttcagggcaggactagtatatattgtgttcttgtgcttttttgaagagaaccttaaga------tg 37556425  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
         ||| |||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||||| |||||| |||||||||||||||||   |||||||    
T  37556426 -----gcttaagagagaaaacttggagatcaaagaggggatcctatggggtgtgttcctttgatgtgagtgtttcttaggttgggaaaac---attgtaa 37556517  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  37556518 tcaccttgggattttgggttcatagtg 37556544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 37561154 - 37561366
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||||||||      ||    
T  37561154 gtgacatgatctagggaaatcgtggcacgatttcttcagggcaggactagtatatattgtgttcttgtgcttttttgaagagaaccttaaga------tg 37561247  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
         ||| |||||||| ||||||||| ||||||| |||||||| ||||||||||| |||||||| |||||| |||||||||||||||||   |||||||    
T  37561248 -----gcttaagagagaaaacttggagatcaaagaggggatcctatggggtgtgttcctttgatgtgagtgtttcttaggttgggaaaac---attgtaa 37561339  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  37561340 tcaccttgggattttgggttcatagtg 37561366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 15045073 - 15044849
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||  |||||||||||||||||||||||  | |||||||  | ||||    
T  15045073 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagaagaacttaaga-gagcttg 15044975  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       |||||    ||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| |||| || ||| || |||||||    
T  15044974 tatgagctttgtagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaa-aacattgtaa 15044876  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||| ||||||||||||||||    
T  15044875 tcaccttgggttttagggttcatagtg 15044849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 1456845 - 1456920
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgctttttt 76  Q
    |||||||| ||| ||||||||||||||||||||||| || | | ||||||||| ||  ||||||||||||||||||    
T  1456845 gtgacacggtcttgggaaatcgtggcacgatttctttagaggaagactagtatatattgtgttcttgtgctttttt 1456920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31180642 - 31180568
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttt 75  Q
    |||||| ||||| ||||||||||||||||||| |||||| | | ||||||||| ||  |||||||||||||||||    
T  31180642 gtgacatgatcttgggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttt 31180568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27450202 - 27449981
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttg---aagacaaccttaagacaacc 97  Q
    |||||||||| | ||||||||||||||||||| |||||| | | | ||||||| ||  ||||||||||||||||||    || | || ||||||| | |     
T  27450202 gtgacacgattt-gggaaatcgtggcacgattgcttcagaggaaggctagtatatattgtgttcttgtgcttttttacaaaaaaaaaacttaagagagc- 27450105  T
Q  98 ttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattg 197  Q
    ||||  ||||| | |||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| |||||||||||  | ||||    
T  27450104 ttgaatgagctta-gagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaaa--acattg 27450008  T
Q  198 taatcaccttgggatttagggttcata 224  Q
    ||||||||||||| |||||||||||||    
T  27450007 taatcaccttgggttttagggttcata 27449981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 1457015 - 1457080
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  1457015 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 1457080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 27445202 - 27445137
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  27445202 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 27445137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 43592511 - 43592446
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  43592511 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 43592446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 43598956 - 43598891
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  43598956 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 43598891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 43604448 - 43604383
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  43604448 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 43604383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 43609940 - 43609875
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  43609940 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 43609875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 27445359 - 27445285
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgctttttt 76  Q
    |||||||||| | ||||||||||||||||||| |||||| | | | ||||||| ||  ||||||||||||||||||    
T  27445359 gtgacacgattt-gggaaatcgtggcacgattgcttcagaggaaggctagtatatattgtgttcttgtgctttttt 27445285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 35745771 - 35745555
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||            
T  35745771 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaaga-------- 35745680  T
Q  101 agagagctcaagagagataacttggaggtcaaagatggg-atcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
       ||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  35745679 ---gagcttaagagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgta 35745583  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||  ||||||||||||    
T  35745582 atcaccttgggattatgggttcatagtg 35745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 10683946 - 10684185
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag-------------acaacct 87  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||             |||||||    
T  10683946 gtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaaggtaaccttaagagacaacct 10684045  T
Q  88 taagacaaccttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaa 187  Q
    |||||||||||||||||     |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10684046 taagacaaccttgagaggttggaagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaa 10684145  T
Q  188 aacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    ||||| ||||||||||||||||||||  ||||||||||||    
T  10684146 aacaacattgtaatcaccttgggattatgggttcatagtg 10684185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39784532 - 39784745
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||||||||||||| ||||||||||            
T  39784532 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagagaaccttaaga-------- 39784623  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       ||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  39784624 ---gagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtctcttaggttgggaaa--aacattgtaa 39784718  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  39784719 tcaccttgggattttgggttcatagtg 39784745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25327871 - 25328070
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||  |||||||||||||||||||||||                       
T  25327871 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaaga------------------- 25327951  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
      ||| || |||||||| ||||||||| ||||||  |||||||| |||| ||||| |||||||||||||||| |||| ||||||||||  || |||||||    
T  25327952 --agaacttaagagagagaacttggagatcaaaggagggatcctatgggttgtgtgtctttgatgagagtgtctcttgggttgggaaa--aacattgtaa 25328047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 25328085 - 25328196
Alignment:
Q  110 aagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgg 209  Q
    |||||||| ||||||||| ||||||  |||||||| |||| ||||| |||||||||||||||| |||| ||||||||||  || ||||||||||||||||    
T  25328085 aagagagagaacttggagatcaaaggagggatcctatgggttgtgtgtctttgatgagagtgtctcttgggttgggaaa--aacattgtaatcaccttgg 25328182  T
Q  210 gatttagggttcat 223  Q
    | ||||||||||||    
T  25328183 gttttagggttcat 25328196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7289635 - 7289713
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaa 79  Q
    |||||||||||| |||||||||||||||||||||||||| | | ||||||||| ||  |||||||||||||||||||||    
T  7289635 gtgacacgatcttgggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaa 7289713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 1261625 - 1261702
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||  |||||||||| ||||||||  |||| | | | ||||||||||||||||||||||||||||||||||    
T  1261625 gtgacacgatct--ggaaatcgtgacacgattttatcagaggaaggctagtatttaaagtgttcttgtgcttttttgaag 1261702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6311728 - 6311651
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttga 78  Q
    ||||||||||   ||||||||||||||| |||||||||| | | ||||||||| ||  ||||||||||||||||||||    
T  6311728 gtgacacgattgtgggaaatcgtggcacaatttcttcagaggaagactagtatatattgtgttcttgtgcttttttga 6311651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 18852847 - 18852912
Alignment:
Q  15 ggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    |||||||||||||||||| |||||| | | ||||||||| ||  ||||||||||||||||||||||    
T  18852847 ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttttgaag 18852912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 4759742 - 4759819
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||  |||||||||| |||||||||||||| | | ||||||||| ||  |||||||||||||| |||||||    
T  4759742 gtgacacgatct--ggaaatcgtgacacgatttcttcagaggaagactagtatatattgtgttcttgtgcttgtttgaag 4759819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 7289779 - 7289844
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  7289779 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 7289844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 30656074 - 30655997
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||  |||||||||||||||||| |||||| | | ||||||||| ||  ||||||||||| ||||||||||    
T  30656074 gtgacacgatct--ggaaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgtttttttgaag 30655997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 18870243 - 18870306
Alignment:
Q  17 aaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    |||||||||||||||| |||||| | | ||||||||| ||  ||||||||||||||||||||||    
T  18870243 aaatcgtggcacgattgcttcagagaaagactagtatatattgtgttcttgtgcttttttgaag 18870306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10688806 - 10688884
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaa 79  Q
    ||||||||||   ||||||||||||||| |||||||||| | | ||||||||| ||  ||||||||||||  |||||||    
T  10688806 gtgacacgattgtgggaaatcgtggcacaatttcttcagaggaagactagtatatattgtgttcttgtgcagttttgaa 10688884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 18852978 - 18853029
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttggg 210  Q
    |||||| ||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  18852978 tctttgttgagagtgtctcttgggttgggaaa--aatattgtaatcaccttggg 18853029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36979806 - 36979741
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtg 69  Q
    ||||||||||||  |||||||||||||||||| |||||| | | | ||||||||| |||||||||||||    
T  36979806 gtgacacgatct--ggaaatcgtggcacgattgcttcagaggaaggctagtattt-aagtgttcttgtg 36979741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18871 - 19086
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||           ||||||||    
T  18871 gtgacacgatctaaggaaatcgtggcacgatttcttcagggcaggactaatatttaaagtgttcttgtgcttttttgaaga-----------caaccttg 18959  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||    
T  18960 agagaacttaagagagaaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaacaacattgtaa 19059  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||||||||| |||  ||||||||||||    
T  19060 tcaccttggaattatgggttcatagtg 19086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 13991 - 14230
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag-------------acaacct 87  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||             |||||||    
T  13991 gtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaaggtaaccttaagagacaacct 14090  T
Q  88 taagacaaccttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaa 187  Q
    |||||||||||||||||     |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14091 taagacaaccttgagaggttggaagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaa 14190  T
Q  188 aacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    ||||| ||||||||||||||||||||  ||||||||||||    
T  14191 aacaacattgtaatcaccttgggattatgggttcatagtg 14230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24265884 - 24266123
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag-------------acaacct 87  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||             |||||||    
T  24265884 gtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaaggtaaccttaagagacaacct 24265983  T
Q  88 taagacaaccttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaa 187  Q
    |||||||||||||||||     |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24265984 taagacaaccttgagaggttggaagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttgggaa 24266083  T
Q  188 aacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    ||||| ||||||||||||||||||||  ||||||||||||    
T  24266084 aacaacattgtaatcaccttgggattatgggttcatagtg 24266123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16880453 - 16880237
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||          |  |||||||    
T  16880453 gtgacacgatctagggaaatcgtggcacgatttcttctgggcaggactagtatttaaagtgttcttgtgctcatttgaag----------gttaaccttg 16880364  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  16880363 agagaacttaagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttggaaaaacaacattgtaa 16880264  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||| |||||||||  ||||||||||||    
T  16880263 tcatcttgggattatgggttcatagtg 16880237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 24261028 - 24261244
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||  |||||||          |  |||||||    
T  24261028 gtgacacgatctagggaaatcgtggcacgatttcatcaggacaggactagtatttaaagtgttcttgtgctcatttgaag----------gttaaccttg 24261117  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||  ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  24261118 agagaacttaagagaggaaacttggagatcaaagatgggatcctttggggtgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaa 24261217  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||| |||||||||  ||||||||||||    
T  24261218 tcatcttgggattatgggttcatagtg 24261244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 16885308 - 16885093
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||          |  |||||||    
T  16885308 gtgacacgatctagggaaatcgtggcacgatttcttctgggcaggactagtatttaaagtgttcttgtgctcatttgaag----------gttaaccttg 16885219  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    ||||| || |||||||  ||||||||| ||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  16885218 agagaacttaagagaggaaacttggagatcaaagatgggatcctttggg-tgtgttcctttgatgagagtgaatcttaggttgggaaaacaacattgtaa 16885120  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||| |||||||||  ||||||||||||    
T  16885119 tcatcttgggattatgggttcatagtg 16885093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 21811950 - 21812160
Alignment:
Q  5 cacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttgagag 104  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||| ||  ||||||||||||||||||||||  |||||||||| ||| |          
T  21811950 cacgatcttgggaaatcgtggcacgatttactcagggcaggactagtatatattgtgttcttgtgcttttttgaagctaaccttaagagaactt------ 21812043  T
Q  105 agctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcac 204  Q
         |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| ||| || |||||||||||    
T  21812044 -----aagagagaaagcttggaggtcaaagaggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttggggaaa-aacattgtaatcac 21812137  T
Q  205 cttgggatttagggttcatagtg 227  Q
    |||||||||  ||||||||||||    
T  21812138 cttgggattatgggttcatagtg 21812160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 19992597 - 19992476
Alignment:
Q  105 agctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcac 204  Q
    |||| |||||||| ||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| |||||||||||| ||| || |||||||||||    
T  19992597 agcttaagagagaaaacttggaggtcaaagaggggatcctatggggtgtgttcctttgatgtgagtgtttcttaggttggggaaa-aacattgtaatcac 19992499  T
Q  205 cttgggatttagggttcatagtg 227  Q
    |||||||||| ||||||||||||    
T  19992498 cttgggattttgggttcatagtg 19992476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 31109278 - 31109505
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagaca-acctt 99  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||  ||||||||||||||||||||||| || ||||||| | | |||    
T  31109278 gtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagataaacttaagagagagctt 31109377  T
Q  100 gagagagctcaagagag-ataacttggaggtcaaagatgggatcc-tttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattg 197  Q
    |   ||||| ||||||| | ||||||||   |||||  |||| || | |||| || || |||||| ||||||||| |||| ||||||||||  || ||||    
T  31109378 gtatgagcttaagagagaaaaacttggatagcaaaggagggaaccatatgggttgagtgtctttgttgagagtgtctcttgggttgggaaa--aacattg 31109475  T
Q  198 taatcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||| ||||||||||||||||    
T  31109476 taatcaccttgggttttagggttcatagtg 31109505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4873514 - 4873310
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||  |||||||||||||||||||||||  | |||||||  | ||||    
T  4873514 gtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagaagaacttaaga-gagcttg 4873416  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
      ||||||  ||||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| ||||||||||  || |||||||    
T  4873415 gaagagct-tagagagagaacttggataacaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaa--aacattgtaa 4873319  T
Q  201 tcaccttgg 209  Q
    |||||||||    
T  4873318 tcaccttgg 4873310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 24024026 - 24024103
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||  || |||||||||||||||||||||||    
T  24024026 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaagactagta--tatagtgttcttgtgcttttttgaag 24024103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 12397298 - 12397078
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtg-cttttttgaagacaaccttaagacaacctt 99  Q
    |||||||||| | |||||||||||||||||||||||||| | |  |||||||| ||  ||||||||||| ||||||||||||  | |||||||  | |||    
T  12397298 gtgacacgatttggggaaatcgtggcacgatttcttcagaggaatactagtatatattgtgttcttgtgccttttttgaagaagaacttaaga-gagctt 12397200  T
Q  100 gagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
    |   |||||  ||||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| ||||||||||  || ||||||    
T  12397199 gtatgagct-tagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggttgggaaa--aacattgta 12397103  T
Q  200 atcaccttgggatttagggttcata 224  Q
    ||||||||||| |||||||||||||    
T  12397102 atcaccttgggttttagggttcata 12397078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 12406563 - 12406498
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||  |||||||||||||    
T  12406563 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttggcttttagggttcata 12406498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 12406650 - 12406598
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtat 53  Q
    |||||||||| | |||||||||||||||||||||||||| | | |||||||||    
T  12406650 gtgacacgatttggggaaatcgtggcacgatttcttcagaggaagactagtat 12406598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 20357231 - 20357289
Alignment:
Q  17 aaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttt 75  Q
    |||||||||||||||| |||||| | | ||||||||| ||  |||||||||||||||||    
T  20357231 aaatcgtggcacgattgcttcagaggaagactagtatatattgtgttcttgtgcttttt 20357289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 24789647 - 24789712
Alignment:
Q  15 ggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    |||||||||| ||||||| |||||| | | | ||||||| |||||||||||||||| | |||||||    
T  24789647 ggaaatcgtgacacgattgcttcagaggaaggctagtatataaagtgttcttgtgcatctttgaag 24789712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 1533112 - 1533177
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgt 68  Q
    ||||||||||||  |||||||||||||||||| |||||| | | | ||||||| || |||||||||||    
T  1533112 gtgacacgatct--ggaaatcgtggcacgattgcttcagaggaaggctagtatatatagtgttcttgt 1533177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 176657 - 176898
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaaga---------------caac 85  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||               ||||    
T  176657 gtgacacgatctagggaaatcgtggcacgatttcctcaggacaggactagtatttaaagtgttcttgtgctcttttgaagaaaaaaccttaagagacaac 176756  T
Q  86 cttaagacaaccttgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttggg 185  Q
    |||||||||||||||||||     |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  176757 cttaagacaaccttgagaggttggaagagagataacttggagatcaaagaggggatcctttggggtgtgttcctttgatgagagtgtatcttaggttggg 176856  T
Q  186 aaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    ||||||| ||||||||||||||||||||  ||||||||||||    
T  176857 aaaacaacattgtaatcaccttgggattatgggttcatagtg 176898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 227
Target Start/End: Complemental strand, 19344801 - 19344585
Alignment:
Q  2 tgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttga 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||             
T  19344801 tgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataaccttaaga--------- 19344711  T
Q  102 gagagctcaagagagataacttggaggtcaaagatggg-atcctttggggtgtgtttctttgatgagagtgtatcttaggttggg-aaaacaatattgta 199  Q
      ||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||    
T  19344710 --gagcttaagagagaaaacttggagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaaacaacattgta 19344613  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||  ||||||||||||    
T  19344612 atcaccttgggattatgggttcatagtg 19344585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 19349660 - 19349443
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||               
T  19349660 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttggagataacctta----------- 19349572  T
Q  101 agagagctcaagagagataacttggaggtcaaagat-gggatcctttggggtgtgtttctttgatgagagtgtatcttaggttggg-aaaacaatattgt 198  Q
    |||||||| |||||||| ||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |||||    
T  19349571 agagagcttaagagagaaaacttagagatcaaagatggggatcctttggggtgtgttcctttgatgagagtgtttcttaggttgggaaaaacaacattgt 19349472  T
Q  199 aatcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||  ||||||||||||    
T  19349471 aatcaccttgggattatgggttcatagtg 19349443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32247166 - 32246951
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgc--ttttttgaagacaaccttaagacaacct 98  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||  ||||||||||| |||||||||| ||| |    
T  32247166 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatatattgtgttcttgtgcctttttttgaagataaccttaagagaactt 32247067  T
Q  99 tgagagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgt 198  Q
               |||||||| ||||||||| ||||||| ||| |||| ||||||||||  ||||||||||||||| |||||||||||||||  || |||||    
T  32247066 -----------aagagagaaaacttggagatcaaagagggggtcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaa--aacattgt 32246980  T
Q  199 aatcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||||||||||||||||||    
T  32246979 aatcaccttgggatttagggttcatagtg 32246951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 39811684 - 39811763
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||  ||||||||||||||||||||||    
T  39811684 gtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaag 39811763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 9296070 - 9296144
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttg 77  Q
    ||||||||||||  | |||||||| ||||||| |||||| | | |||||||||||||||||||||||||||||||||    
T  9296070 gtgacacgatct--gaaaatcgtgacacgattgcttcagaggaagactagtatttaaagtgttcttgtgcttttttg 9296144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 39811842 - 39811910
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    |||||| ||||||||| |||||||||| |||||  | ||||||||||||||||| ||||||||||||||||    
T  39811842 tctttgttgagagtgtctcttaggttgagaaaa--acattgtaatcaccttgggttttagggttcatagtg 39811910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14291917 - 14291850
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgc 70  Q
    ||||||||||||  ||||||||||||||||||||||||| | | ||||||||| ||  ||||||||||||    
T  14291917 gtgacacgatct--ggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgc 14291850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 11098595 - 11098662
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgc 70  Q
    ||||||||||||  ||||||||||||||||||||||||| | | |||||| || ||  ||||||||||||    
T  11098595 gtgacacgatct--ggaaatcgtggcacgatttcttcagaggaagactagcatatattgtgttcttgtgc 11098662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 5733039 - 5732827
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||| ||||||||||||||||||||||            
T  5733039 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaggactagtatatattgtgttcttgtg-ttttttgaagacaaccttaaga-------- 5732949  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       ||||| |||||||| ||||||||| ||||||| |||||||| ||||||||||  ||||||||||||||| |||||||||||||||  || |||||||    
T  5732948 ---gagcttaagagagaaaacttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtttcttaggttgggaaa--aacattgtaa 5732854  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||| |||||| ||||||    
T  5732853 tcaccttgggattaagggtttatagtg 5732827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45347524 - 45347738
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||  ||||||||||||||||||||||||||||||||||            
T  45347524 gtgacacgatctagggaaatcgtggcacgatttcttcaggggaaaactagtatatattgtgttcttgtgcttttttgaagacaaccttaaga-------- 45347615  T
Q  101 agagagctcaagagagataa-cttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgta 199  Q
       ||||| |||||||| || ||||||| ||||||| |||||||| ||||||||||  ||||||||||||||| |||||||||||||||  || ||||||    
T  45347616 ---gagcttaagagagaaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagtgtctcttaggttgggaaa--aacattgta 45347710  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||| ||||||||||||||||    
T  45347711 atcaccttggggtttagggttcatagtg 45347738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 3814399 - 3814186
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||| ||||||||||||||||| |||||||||||||||| | ||||||||| ||  ||||||||||||||||||||||||||||||| ||            
T  3814399 gtgacaagatctagggaaatcgtgacacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagacaaccttagga-------- 3814308  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       ||||| |||||||| ||||||||  ||||||  |||||||| |||||||||| |||||||||||||||| |||||||||||||||  || |||||||    
T  3814307 ---gagcttaagagagaaaacttggacatcaaaggagggatcctatggggtgtgtgtctttgatgagagtgtttcttaggttgggaaa--aacattgtaa 3814213  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||| ||||||||||||||||    
T  3814212 tcaccttgggttttagggttcatagtg 3814186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45357005 - 45357218
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||  |||||||||||||||||||||||           |||||||     
T  45357005 gtgacacgatctagggaaatcgtgacacgatttcttctggggaggactagtatatattgtgttcttgtgcttttttgaaga-----------caacctta 45357093  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  45357094 agagagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 45357191  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||| ||||||||||||||||    
T  45357192 tcaccttggggtttagggttcatagtg 45357218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 18856102 - 18855889
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||  |||||||||||||||||||||||||||||||               
T  18856102 gtgacatgatctagggaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaagacaacctta----------- 18856014  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
    |||||||| |||||||| | ||||||| ||||||| |||| ||| |||||||| |  |||||||||||| || |||||||||||||||  || |||||||    
T  18856013 agagagcttaagagagaaatcttggagatcaaagaggggagcctatggggtgtttgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 18855916  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||  ||||||||||||    
T  18855915 tcaccttgggattgtgggttcatagtg 18855889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9228893 - 9229115
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||  ||||||||||||||||||||||  || |||||||  | ||||    
T  9228893 gtgacacgatctagggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaagtgaatcttaaga-gagcttg 9228991  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttagg-ttgggaaaacaatattgta 199  Q
       |||||  ||||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| || ||||||||||   ||||||    
T  9228992 tatgagct-tagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaac---attgta 9229087  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||| ||||||||||||||||    
T  9229088 atcaccttgggttttagggttcatagtg 9229115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9224106 - 9224328
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||||||| |||||||||| | | ||||||||| ||  |||||||| |||||||||||||  || |||||||  | ||||    
T  9224106 gtgacacgatctagggaaatcgtggcacaatttcttcagaggaagactagtatatattgtgttcttctgcttttttgaagtgaatcttaaga-gagcttg 9224204  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttagg-ttgggaaaacaatattgta 199  Q
       |||||  ||||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| || ||||||||||   ||||||    
T  9224205 tatgagct-tagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaac---attgta 9224300  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||| ||||||||||||||||    
T  9224301 atcaccttgggttttagggttcatagtg 9224328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 18712462 - 18712541
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaag 80  Q
    ||||||| ||||||| ||||||||||||||||||||||||| | ||||||||| ||  ||||||||||||||||||||||    
T  18712462 gtgacacaatctaggaaaatcgtggcacgatttcttcaggggaagactagtatatattgtgttcttgtgcttttttgaag 18712541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 56141719 - 56141797
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaa 79  Q
    |||||||||||| |||||||||||||||||||||||||| | | ||||||||| ||  |||||||||||||||||||||    
T  56141719 gtgacacgatcttgggaaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgcttttttgaa 56141797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 51520689 - 51520624
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcata 224  Q
    |||||| ||||||||| |||| |||||||||||  | ||||||||||||||||| |||||||||||||    
T  51520689 tctttgttgagagtgtctcttgggttgggaaaa--acattgtaatcaccttgggttttagggttcata 51520624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 29761055 - 29761002
Alignment:
Q  17 aaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgc 70  Q
    ||||||||||||||||||||||| | | ||||||||| ||  ||||||||||||    
T  29761055 aaatcgtggcacgatttcttcagaggaagactagtatatattgtgttcttgtgc 29761002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 738 - 525
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| |||| ||  ||||||||||||||||||||||||||||||||||            
T  738 gtgacacgatctagggaaatcgtgacacgatttcttcaggggaggactggtatatattgtgttcttgtgcttttttgaagacaaccttaaga-------- 647  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttaggttgggaaaacaatattgtaa 200  Q
       ||||| |||||||| | ||||||| ||||||| |||||||| ||||||||||  |||||||||||| || |||||||||||||||  || |||||||    
T  646 ---gagcttaagagagaaatcttggagatcaaagaggggatcctatggggtgtgtgcctttgatgagagagtttcttaggttgggaaa--aacattgtaa 552  T
Q  201 tcaccttgggatttagggttcatagtg 227  Q
    |||||||||||||| ||||||||||||    
T  551 tcaccttgggattttgggttcatagtg 525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34761 - 34983
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgcttttttgaagacaaccttaagacaaccttg 100  Q
    |||||||||||||||||||||||||||| |||||||||| | | ||||||||| ||  |||||||| |||||||||||||  || |||||||  | ||||    
T  34761 gtgacacgatctagggaaatcgtggcactatttcttcagaggaagactagtatatattgtgttcttttgcttttttgaagtgaatcttaaga-gagcttg 34859  T
Q  101 agagagctcaagagagataacttggaggtcaaagatgggatcctttggggtgtgtttctttgatgagagtgtatcttagg-ttgggaaaacaatattgta 199  Q
       |||||  ||||||| ||||||||   |||||  |||| ||  |||| || || |||||| ||||||||| |||| || ||||||||||   ||||||    
T  34860 tatgagct-tagagagagaacttggatagcaaaggagggaaccaatgggttgagtgtctttgttgagagtgtctcttgggtttgggaaaac---attgta 34955  T
Q  200 atcaccttgggatttagggttcatagtg 227  Q
    ||||||||||| ||||||||||||||||    
T  34956 atcaccttgggttttagggttcatagtg 34983  T

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Target: scaffold0355 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 3544 - 3619
Alignment:
Q  1 gtgacacgatctagggaaatcgtggcacgatttcttcagggcaggactagtatttaaagtgttcttgtgctttttt 76  Q
    ||||||||||||||| |||||||| |||||||||||||||| | ||||||||| ||  || |||||||||||||||    
T  3544 gtgacacgatctaggaaaatcgtgacacgatttcttcaggggaagactagtatatattgtattcttgtgctttttt 3619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 3702 - 3770
Alignment:
Q  157 tctttgatgagagtgtatcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    |||||| ||||||||| ||||||||| ||||||  | ||||||||||||||||| ||||||||||||||||    
T  3702 tctttgttgagagtgtctcttaggttaggaaaa--acattgtaatcaccttgggttttagggttcatagtg 3770  T

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Target: scaffold0355; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 9514 - 9565
Alignment:
Q  174 tcttaggttgggaaaacaatattgtaatcaccttgggatttagggttcatagtg 227  Q
    ||||||||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  9514 tcttaggttgggaaaa--acattgtaatcaccttgggttttagggttcatagtg 9565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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