View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_high_3 (Length: 549)
Name: NF9794_high_3
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 11 - 331
Target Start/End: Original strand, 45146784 - 45147096
Alignment:
| Q |
11 |
ggacatcataaaacgtagaagaattgcaaatgcattaaaattaaagtgcacgaccaaccactacaccaaacagaaataagttatttgccacgaaaacacg |
110 |
Q |
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| T |
45146784 |
ggacaccataaaacgtagaagaattgcaaatgcattaaaattaaagtgcacgaccaaccactacaccaaacagaaataagttatttgccacgaaaacacg |
45146883 |
T |
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| Q |
111 |
ccaccaaaaactatataaaattaattaaattaaattgtggctccattggattttactctattaccctttatgtgtcaatctatatcacccatttcagttt |
210 |
Q |
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| T |
45146884 |
ccaccaaaaactatataaaattaa---------attgtggcgccattggattttactctattaccctttatgtgttaatctacctcacccatttcagttt |
45146974 |
T |
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| Q |
211 |
agccccaca-cacaacatgaaaaataacaatatctggttgaaacttccttccgacaagggtgggaaagagacaaaaatgccccactaactaagggctttt |
309 |
Q |
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| T |
45146975 |
aggcccacaacacaacatgaaaaataacaatatctggttgaaacttccttccgacaagggtgggaaagagacaaaaatgccccactaactaagggctttt |
45147074 |
T |
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| Q |
310 |
tcgtcattgagtaccattacat |
331 |
Q |
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| T |
45147075 |
tcgtcattgagtaccattacat |
45147096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 362 - 512
Target Start/End: Original strand, 45147170 - 45147322
Alignment:
| Q |
362 |
tcgttctttgttgttgtaacttgaatccaaagtcacttattttctctgaattattaaatactcctatacgctttttctaaaaattatcatactaattaaa |
461 |
Q |
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| T |
45147170 |
tcgttctttgttgttgtaacttgaatccaaagtcacttattttctctgaattattaaataatcc--tacgctttttctaaaaattatcatactaattaaa |
45147267 |
T |
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| Q |
462 |
gttacagtttg----taaatgacacaatatggttacggtgacattaacacacttt |
512 |
Q |
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| T |
45147268 |
gttacagtttgtaaataaatgacacaatatggttacggggacattaaaacacttt |
45147322 |
T |
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