View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_high_34 (Length: 238)
Name: NF9794_high_34
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 13762942 - 13762840
Alignment:
| Q |
118 |
catccagatccttgatattatctctgaactcccctagtctaaagtccatatttctaaaagtctacttaatccacccctttaggacaaccttaagactcta |
217 |
Q |
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| T |
13762942 |
catccagatccttgatattatctctcaactcccctagtctaaagtccatatttct--aagtctccttaatccacccctttaggacaaccttaagactcta |
13762845 |
T |
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| Q |
218 |
acttt |
222 |
Q |
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||||| |
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| T |
13762844 |
acttt |
13762840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13765860 - 13765748
Alignment:
| Q |
1 |
ctcttgaccattggaacatctacgagtcttagatcttcaaaatagtccacaaatacgccaaacactggttcttattagctacctccaccacaacaagatc |
100 |
Q |
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||||||||||||||||||||| |||||||| |||| |||||| ||| ||||||| ||||||||||||||||||| |||||||||||| | ||||||||| |
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| T |
13765860 |
ctcttgaccattggaacatctgcgagtcttggatcgtcaaaacagtttacaaataggccaaacactggttcttatcagctacctccacaaaaacaagatc |
13765761 |
T |
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| Q |
101 |
ccttcccttagcc |
113 |
Q |
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||| ||||||||| |
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| T |
13765760 |
cctccccttagcc |
13765748 |
T |
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