View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9794_high_5 (Length: 436)
Name: NF9794_high_5
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 49 - 410
Target Start/End: Original strand, 42955276 - 42955639
Alignment:
| Q |
49 |
ttcaacgtaataaaaatcttcttgacattagtagccaaacaacgccctttgattttgtgagccaactgggcaagagtatatggataaaaagttgtttgag |
148 |
Q |
| |
|
|||| |||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42955276 |
ttcatcgtaataaaagtcttcttaatattagtagtcaaacaacgccctttgattttgtgagccaattgggcaagagtatatggataaaaagttgtttgag |
42955375 |
T |
|
| Q |
149 |
caaaaaatatttcaaatgaatagatatactcacatttgagaatagattgttcgtatatcaagtgtgattaaagtctcacattgaataaaaaa-tacatgt |
247 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||| |
|
|
| T |
42955376 |
cacaaaatatttcaaatgaatagatagactcacatttgagaagagattgttcgtatatcaaatgtgattaaagtcttaaattgaataaaaaattacatgt |
42955475 |
T |
|
| Q |
248 |
tgagaatcatatacatgaaatggtcatgcctaatgtcttgaggtttctgatgaatgtgtggtttccaaatcacttatatggttgttcttaattcaatgtg |
347 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
42955476 |
tgagaatcatatacatgaaatggtcctgcctaatgtcttaaggtttctgatgaatgcgtggtttccaaatcactgatatagttgttcttaattcaatgtg |
42955575 |
T |
|
| Q |
348 |
atgatcaagagatgaaaaaacatttattatcaaagtacatgta-cccacgagagtgtcatggaa |
410 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42955576 |
atgatcaagagatgaaaaaacattcattatcaaagtacatgtaccccacgagagtgtcatggaa |
42955639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 42955186 - 42955222
Alignment:
| Q |
17 |
atacactatacttacttcatcaattagaaaacttcaa |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42955186 |
atacactatacttacttcatcaattagaaaatttcaa |
42955222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 13006393 - 13006346
Alignment:
| Q |
306 |
tggtttccaaatcacttatatggttgttcttaattcaatgtgatgatc |
353 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
13006393 |
tggtgtccaactcacttatgtggttgttcttaatccaatgtgatgatc |
13006346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 269
Target Start/End: Original strand, 42724965 - 42725073
Alignment:
| Q |
163 |
aatgaatagatatactcacatttgaga-atagattgttcgtatatcaagtgtgattaa-agtctcacattgaataaaaaatacatgttgagaatcatata |
260 |
Q |
| |
|
|||||||||||| |||||| ||||| | |||||||| | || |||||||| | ||| | ||| ||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
42724965 |
aatgaatagataagctcacacttgagtgagagattgttggaatgtcaagtgttagtaagaatcttacattgaataaaaaacacattttgagaataatata |
42725064 |
T |
|
| Q |
261 |
catgaaatg |
269 |
Q |
| |
|
|||||||| |
|
|
| T |
42725065 |
gatgaaatg |
42725073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University