View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_10 (Length: 376)
Name: NF9794_low_10
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 11420428 - 11420060
Alignment:
| Q |
1 |
cctttgattaccaaaaaacgatgtttacaccttttctttttctcgatcttgccttgtcaatctttttctcaatcatagtattttgtatttgtattcatta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11420428 |
cctttgattaccaaaaaacgatgtttacactttttctttttctctatcttgccttgtcaatctttttctcaatcatagtattttgtatttgtattcatta |
11420329 |
T |
|
| Q |
101 |
taaagctgcaaagaaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaagatgatttctataaatttcaccatcttgaagagtgtcaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11420328 |
taaagctgcaaaggaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaagatgatttctataaatttcaccatcttgaagagtgtcaa |
11420229 |
T |
|
| Q |
201 |
attagcaccaatttatacggggcaaggataaattgtgaagaaagaaaatttttaatagattctataatagatgcacactatgccctaaacctagccccgg |
300 |
Q |
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||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11420228 |
attagcaccaatttatatggggtaaggataaattgtgatgaaagaaaatttttaatagattctataatagatgcacactatgccctaaacctagccccgg |
11420129 |
T |
|
| Q |
301 |
aaacactttatctttgtgtcaatattattgatcgatttctttcgaaattgaatcctccctcaacaccaa |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11420128 |
aaacactttatctttgtgtcaatattattgatcgatttctttcgaaattgaatcctccctcaacaccaa |
11420060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 11390196 - 11390564
Alignment:
| Q |
1 |
cctttgattaccaaaaaacgatgtttacaccttttctttttctcgatcttgccttgtcaatctttttctcaatcatagtattttgtatttgtattcatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390196 |
cctttgattaccaaaaaacgatgtttacactttttctttttctcgatcttgccttgtcaatctttttctcaatcatagtattttgtatttgtattcatta |
11390295 |
T |
|
| Q |
101 |
taaagctgcaaagaaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaagatgatttctataaatttcaccatcttgaagagtgtcaa |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390296 |
taaagctgcaaaggaaaatctcaaccacaacgaagaaaaatcattttggtatgattatgaagatgatttctataaatttcaccatcttgaagagtgtcaa |
11390395 |
T |
|
| Q |
201 |
attagcaccaatttatacggggcaaggataaattgtgaagaaagaaaatttttaatagattctataatagatgcacactatgccctaaacctagccccgg |
300 |
Q |
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||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11390396 |
attagcaccaatttatatggggtaaggataaattgtgacgaaagaaaattgttaatagattctataatagatgcacactatgccctaaacctagccccgg |
11390495 |
T |
|
| Q |
301 |
aaacactttatctttgtgtcaatattattgatcgatttctttcgaaattgaatcctccctcaacaccaa |
369 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11390496 |
aaacactttatctttgtgtcaatattattgatcgatttctttccaaattgaatcctccctcaacaccaa |
11390564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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