View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_11 (Length: 373)
Name: NF9794_low_11
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 363
Target Start/End: Original strand, 17931939 - 17932282
Alignment:
| Q |
20 |
agctgcacatgatgcatgtacaacgtccatcccatatttggatcatagtgatggaatgtgtaatttggtaatccagtgaacaaaagtacattcttttgca |
119 |
Q |
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| T |
17931939 |
agctgcacatgatgcatgtacaacgtccatcccatatttggatcatattgatggaatgtgtaatttggtaatccagtgaacaaaagtacattcttttgca |
17932038 |
T |
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| Q |
120 |
ccggaagtccacttggaatatgctgaagagatttgtatctgacccctgatgattcatttgatccgtaattccctagaagtttatttgtgccaaagtttgc |
219 |
Q |
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| T |
17932039 |
ccggaagtccacttggaatatgctgaagagatttgtatctgacccctgacgattcatttgatccgtaattcccttcaagtttatttgtgccaaagtttgc |
17932138 |
T |
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| Q |
220 |
ttctaaattttcggtacatccataggtttgaggtagctcttgttgacatgttattagattcttatcttttagcatagttccactagcttgcgatcttgta |
319 |
Q |
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| T |
17932139 |
ttctaaattttcggtacatccataggtttgaggtagctcttgttgacatgttattagattcttatcttttagcatagttccactagcttgcgatcttgta |
17932238 |
T |
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| Q |
320 |
tcagcagaatttcttacgcactctgtcatcaactgttgcctatg |
363 |
Q |
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| T |
17932239 |
tcagcagaatttcttacgcactctgtcgtcaactgttgcctatg |
17932282 |
T |
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