View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_12 (Length: 368)
Name: NF9794_low_12
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 361
Target Start/End: Original strand, 31615025 - 31615368
Alignment:
| Q |
18 |
atattactatcaggagttagattaatccaacgactgagctttggccggagaaacttgagaggcggtaaaagattcaagttgtttaataagtatataccaa |
117 |
Q |
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| T |
31615025 |
atattactatcaagagttagattaatccaacgattgagctttggccggagaaacttgagaggcagtaaaagattcaagttgtttaataagtatataccaa |
31615124 |
T |
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| Q |
118 |
aaagttcaacttgtcttcaattttgaatcttctctagtctctccaatgaaaccttggtttttaaattaatctaatagttgagagtattttatctcgccgg |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31615125 |
aaagttcaacttatcttcaattttgaatcttctctagtctctccaatgaaaccttggtttttaaattaatctaatagttgagagtattttatctcgccgg |
31615224 |
T |
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| Q |
218 |
ttagattaattcaacagttaacacgaaatagttcaaaaatgtcgcgacattataatattacttaaaatatgtgttctgaaacaatgatacaatatagttt |
317 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31615225 |
ttagattaattcaacggttaacacgaaatagttcaaaaaggtcgcgacattataatattacttaaaatatgtgttctgaaacaatgatacaatataattt |
31615324 |
T |
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| Q |
318 |
taattaaattcaaaaacttttaacttagtagttggcctttgcta |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31615325 |
taattaaattcaaaaacttttaacttagtagttggcctctgcta |
31615368 |
T |
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