View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_low_13 (Length: 366)

Name: NF9794_low_13
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9794_low_13
NF9794_low_13
[»] chr1 (9 HSPs)
chr1 (109-356)||(8935647-8935894)
chr1 (195-356)||(8959287-8959448)
chr1 (217-356)||(8924144-8924283)
chr1 (21-94)||(8935464-8935537)
chr1 (295-338)||(8947380-8947423)
chr1 (26-77)||(50773187-50773238)
chr1 (27-71)||(11135798-11135842)
chr1 (27-71)||(11430500-11430544)
chr1 (27-71)||(14094078-14094122)
[»] chr2 (5 HSPs)
chr2 (27-78)||(6315710-6315761)
chr2 (27-77)||(24895344-24895394)
chr2 (27-77)||(38104301-38104351)
chr2 (27-71)||(1110257-1110301)
chr2 (27-71)||(42182948-42182992)
[»] chr7 (6 HSPs)
chr7 (27-71)||(22786210-22786254)
chr7 (37-77)||(41508362-41508402)
chr7 (30-71)||(46067997-46068038)
chr7 (27-71)||(19840962-19841006)
chr7 (31-71)||(26703521-26703561)
chr7 (27-71)||(45909515-45909559)
[»] chr5 (2 HSPs)
chr5 (21-71)||(32401176-32401226)
chr5 (27-71)||(42224668-42224712)
[»] chr8 (1 HSPs)
chr8 (27-71)||(1205886-1205930)
[»] chr6 (2 HSPs)
chr6 (27-71)||(4595801-4595845)
chr6 (27-71)||(19090292-19090336)
[»] chr4 (2 HSPs)
chr4 (27-71)||(13069999-13070043)
chr4 (27-71)||(16178642-16178686)
[»] chr3 (4 HSPs)
chr3 (27-71)||(357819-357863)
chr3 (31-71)||(10769806-10769846)
chr3 (27-71)||(38928086-38928130)
chr3 (21-77)||(46237117-46237173)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 109 - 356
Target Start/End: Original strand, 8935647 - 8935894
Alignment:
Q  109 cgaaaattttgattttaaaatgggaaacaagagcgcaattaagtagactaaaatgtaaagttgtacttaccaaataggtaaggtggacaaccgacgtgaa 208  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8935647 cgaaaatttcgattttaaaacaagaaacaagagcgcaattaagtagacgaaaatgtaaagttgaacttaccaaataggtaaggtggacaaccgacgtgaa 8935746  T
Q  209 atcccaatgttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccgcaatgatcttcaca 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935747 atcccaatgttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccgcaatgatcttcaca 8935846  T
Q  309 agcaccagtcatccaagaaacttcaaatccactcaccaacatcctatg 356  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8935847 agcaccagtcatccaagaaacttcaaaaccactcaccaacatcctatg 8935894  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 195 - 356
Target Start/End: Original strand, 8959287 - 8959448
Alignment:
Q  195 acaaccgacgtgaaatcccaatgttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccg 294  Q
    ||||||||| ||||| ||||  |||||| ||||| |  | |||||||  | ||||||||| |||||||||||||||||||||||||||||| ||| |||     
T  8959287 acaaccgacatgaaaacccagcgttgttctacatagcatagacggattgtcgcattcaagactccaagtggtttctctcaaatagcaatctgggattcca 8959386  T
Q  295 caatgatcttcacaagcaccagtcatccaagaaacttcaaatccactcaccaacatcctatg 356  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |||||    
T  8959387 caatgatcttcacaaggaccactcatccaagaaacttcaaatccacccaccaacatgctatg 8959448  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 356
Target Start/End: Original strand, 8924144 - 8924283
Alignment:
Q  217 gttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccgcaatgatcttcacaagcaccag 316  Q
    |||||| ||||| | || |||||||||| ||||||||| |||||||||||||||||||||||||||||| |   ||| ||| |||||||||||| ||||     
T  8924144 gttgttctacatagactagacggatcatcgcattcaagactccaagtggtttctctcaaatagcaatctggttttccacaaagatcttcacaaggaccac 8924243  T
Q  317 tcatccaagaaacttcaaatccactcaccaacatcctatg 356  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  8924244 tcatccaagaaacttcaaaaccactcaccaacatcctatg 8924283  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 8935464 - 8935537
Alignment:
Q  21 ctacgttttggaaatggaacccatataaagtggtgaaatatacattgatttaatccagctattaagtgagtgtt 94  Q
    |||| ||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935464 ctacattttggacatgcaactcacataaagtggtgaaatatacattgatttaatccagctattaagtgagtgtt 8935537  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 8947380 - 8947423
Alignment:
Q  295 caatgatcttcacaagcaccagtcatccaagaaacttcaaatcc 338  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  8947380 caatgatcttcacaaggaccactcatccaagaaacttcaaatcc 8947423  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 50773187 - 50773238
Alignment:
Q  26 ttttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 77  Q
    |||||||||||||||||| ||||||||||| || ||| |||||||| |||||    
T  50773187 ttttggaaatggaacccacataaagtggtggaacatatattgattttatcca 50773238  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 11135842 - 11135798
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  11135842 tttggaaatggaacccacataaagtggtgggacatacattgattt 11135798  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 11430544 - 11430500
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  11430544 tttggaaatggaacccacataaagtggtgggacatacattgattt 11430500  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 14094078 - 14094122
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  14094078 tttggaaatggaacccacataaagtggtgggacatacattgattt 14094122  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 6315761 - 6315710
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgatttaatccag 78  Q
    ||||||||||||||| ||||||||||||| || |||||||||||| ||||||    
T  6315761 tttggaaatggaacctatataaagtggtggaacatacattgatttcatccag 6315710  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 24895344 - 24895394
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 77  Q
    |||||||||||||| || ||||| ||||| ||||||||||||||| |||||    
T  24895344 tttggaaatggaactcacataaaatggtggaatatacattgattttatcca 24895394  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 38104351 - 38104301
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 77  Q
    ||||| ||||||||||| ||||||||||| || |||||||||||| |||||    
T  38104351 tttgggaatggaacccaaataaagtggtggaacatacattgattttatcca 38104301  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 1110301 - 1110257
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  1110301 tttggaaatggaacccacataaagtggtgggacatacattgattt 1110257  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 42182992 - 42182948
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  42182992 tttggaaatggaacccacataaagtggtgggacatacattgattt 42182948  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 22786254 - 22786210
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||    
T  22786254 tttggaaatggaacccacataaagtggtgagacatacattgattt 22786210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 41508362 - 41508402
Alignment:
Q  37 gaacccatataaagtggtgaaatatacattgatttaatcca 77  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  41508362 gaacccatataaagtagtgaaatatacattgatttcatcca 41508402  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 46068038 - 46067997
Alignment:
Q  30 ggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    |||||||||||||| ||||||||||| || ||||||||||||    
T  46068038 ggaaatggaacccacataaagtggtggaacatacattgattt 46067997  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 19840962 - 19841006
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||| | | ||||||||||||    
T  19840962 tttggaaatggaacccacataaagtggtaagacatacattgattt 19841006  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 26703521 - 26703561
Alignment:
Q  31 gaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||| |||||||||||| | ||||||||||||    
T  26703521 gaaatggaacccacataaagtggtgagacatacattgattt 26703561  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 45909559 - 45909515
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  45909559 tttggaaatggaacccacataaagtggtgggacatacattgattt 45909515  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 32401226 - 32401176
Alignment:
Q  21 ctacgttttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    |||||||||  |||||||||||| ||||||||||| |||||||||| ||||    
T  32401226 ctacgtttttaaaatggaacccacataaagtggtggaatatacattaattt 32401176  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 42224668 - 42224712
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  42224668 tttggaaatggaacccacataaagtggtgggacatacattgattt 42224712  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 1205930 - 1205886
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||| |||||||||||||||||||| | ||||||| ||||    
T  1205930 tttggaaatagaacccatataaagtggtgagacatacattaattt 1205886  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 4595845 - 4595801
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    |||| |||||||||||||| |||||||||| | ||||||||||||    
T  4595845 tttgaaaatggaacccataaaaagtggtgagacatacattgattt 4595801  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 19090292 - 19090336
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  19090292 tttggaaatggaacccacataaagtggtgggacatacattgattt 19090336  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 13070043 - 13069999
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    |||| |||||||||||| ||||||||||| || ||||||||||||    
T  13070043 tttgaaaatggaacccacataaagtggtggaacatacattgattt 13069999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 16178686 - 16178642
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  16178686 tttggaaatggaacccacataaagtggtgggacatacattgattt 16178642  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 357863 - 357819
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||    
T  357863 tttggaaatggaacccacataaagtggtgaggcatacattgattt 357819  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 10769806 - 10769846
Alignment:
Q  31 gaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    |||||||||||||||||||||||||  | ||||||||||||    
T  10769806 gaaatggaacccatataaagtggtgggacatacattgattt 10769846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 38928086 - 38928130
Alignment:
Q  27 tttggaaatggaacccatataaagtggtgaaatatacattgattt 71  Q
    ||||||||||||||||||||||||| | |  ||||||||||||||    
T  38928086 tttggaaatggaacccatataaagtagagggatatacattgattt 38928130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 46237117 - 46237173
Alignment:
Q  21 ctacgttttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 77  Q
    |||| |||| ||||||||||||| |||||||||||  | |||||||||||| |||||    
T  46237117 ctacattttagaaatggaacccacataaagtggtgggacatacattgatttcatcca 46237173  T

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