View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_14 (Length: 355)
Name: NF9794_low_14
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 26965410 - 26965744
Alignment:
| Q |
1 |
agatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtctggagaactagaaactacaggagttaccttgcgagaatgactagcggtagtg |
100 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26965410 |
agatggaatctgtgtatgcgcagtcatcggcacaggtataaattggtctggagaactagaaactacaggagttaccttgtgagaatgactagcggtagtg |
26965509 |
T |
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| Q |
101 |
gatccgacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965510 |
gatccgacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcat |
26965609 |
T |
|
| Q |
201 |
gatgtgaatatgtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttgatacacagctgatgaagtatgggtaggtgg |
300 |
Q |
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| T |
26965610 |
gatgtgaatatgtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttgatacacagctgatgaagtatgggtaggtgg |
26965709 |
T |
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| Q |
301 |
aggcggagcatatgtatgagaagatggaatctgtg |
335 |
Q |
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| T |
26965710 |
aggcggagcatatgtatgagaagatggaatctgtg |
26965744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 26965731 - 26966079
Alignment:
| Q |
1 |
agatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtctggagaactagaaactacaggagttaccttgcgagaatgactagcggtagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||| |
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| T |
26965731 |
agatggaatctgtgtatgtgcagtcgtcggcacaggtatacattggtctggagaactagaaactacacaagttaccttgagagaatgactagtggtagtg |
26965830 |
T |
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| Q |
101 |
gatccgacactcttccccttaccactgggtggccgcttgtgtaaaggtccacccgacaatggatttgtaggtggtggattcaccgatggagcgtatgcat |
200 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| |||| |||||||||| ||||||| |
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| T |
26965831 |
gatccgacacccttccccttaccactgggtggccgtatgtgtgaaggtccacccgacaacggatttgtaggtggtgtattcgccgatggagcatatgcat |
26965930 |
T |
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| Q |
201 |
gatgtgaatat---------------gtaggtggtagcgtgtatcccgatggtgtaagtttcggtggtgcatatgcattttgttgatacacagctgatga |
285 |
Q |
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|||||| |||| |||||||||| |||||||||||||||||| |||| ||||||||||| |||| |||| ||||||||| |||||| |
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| T |
26965931 |
gatgtggatatattggtggtggataaataggtggtagtgtgtatcccgatggtgtatgttttggtggtgcataggcatgttgtggatacacaggtgatga |
26966030 |
T |
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| Q |
286 |
agtatgggtaggtggaggcggagcatatgtatgagaagatggaatctgt |
334 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
26966031 |
agtatgcgtaggtggaggcggagcatatgtatgaggagatggagtctgt |
26966079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 26965113 - 26965200
Alignment:
| Q |
1 |
agatggaatctgtgtatgtgcagtcgtcggcacaggtataaattggtct---ggagaactagaaactacaggagttaccttgcgagaa |
85 |
Q |
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||||||| || |||||||||||||| |||||| ||||||||| |||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
26965113 |
agatggagtccgtgtatgtgcagtcatcggcataggtataaactggtctaaaggagaaccagaaactactcgagttaccttgcgagaa |
26965200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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