View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_17 (Length: 315)
Name: NF9794_low_17
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_17 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 36 - 298
Target Start/End: Original strand, 21447141 - 21447403
Alignment:
| Q |
36 |
taatggacatgtaatcaagttttgacatacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgatt |
135 |
Q |
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| T |
21447141 |
taatggacatgtaatcaagttttgacatacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgatt |
21447240 |
T |
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| Q |
136 |
agcctatcaagactgtcaatcaccatctcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagctggtct |
235 |
Q |
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| T |
21447241 |
agcctatcaagactgtcaatcaccatctcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagccagtct |
21447340 |
T |
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| Q |
236 |
ctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgcttcatccttgggaagtg |
298 |
Q |
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| T |
21447341 |
ctgatgtccgtgtatcaggtttgctagaattctgaccatcagttgattcatccttgggaagtg |
21447403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 63 - 298
Target Start/End: Complemental strand, 4368 - 4133
Alignment:
| Q |
63 |
tacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatc |
162 |
Q |
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| T |
4368 |
tacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcaccatc |
4269 |
T |
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| Q |
163 |
tcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagctggtctctgatgtccgtgtatcaggtttgctag |
262 |
Q |
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| T |
4268 |
tcactctgcgccttatatccttcaatagccatttgttttggacttggatgctcagtagcacaagagccagtctctgatgtccgtgtatcaggtttgctag |
4169 |
T |
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| Q |
263 |
aattctgaccatcagttgcttcatccttgggaagtg |
298 |
Q |
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| T |
4168 |
aattctgaccatcagttgattcatccttgggaagtg |
4133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 40685453 - 40685310
Alignment:
| Q |
59 |
gacatacaacaaagttgagactcaagtgaactccctcgacaacaacagactgttttcgttcttcccaggcagtgattagcctatcaagactgtcaatcac |
158 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||| | ||||||||||||||| || ||||||||||| |
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| T |
40685453 |
gacatacaacaaagttgagactcaagtgaacaccctcaacaacaacggactctttccgttcttcccatgaagtgattagcctatctaggctgtcaatcac |
40685354 |
T |
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| Q |
159 |
catctcactctgcgccttatatccttcaatagccatttgttttg |
202 |
Q |
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||| |||||||| ||||| ||||||||| |||||||||||||| |
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| T |
40685353 |
catttcactctgggccttgaatccttcaacagccatttgttttg |
40685310 |
T |
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