View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_24 (Length: 266)
Name: NF9794_low_24
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 85 - 257
Target Start/End: Complemental strand, 25253565 - 25253393
Alignment:
| Q |
85 |
gcatcatacaagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataactatttcatgctcgagtgcgagaaatgcatgtaagagagacc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
25253565 |
gcatcatacaagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataaatatttcatgctcgagtgcgagaaataaatgtaagagagacc |
25253466 |
T |
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| Q |
185 |
atagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253465 |
atagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgc |
25253393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 25253916 - 25253845
Alignment:
| Q |
17 |
atgcatatcttcaagggtctgcacaactcccaaccaaaggcccccctaattctctaagacagtaaatggcat |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253916 |
atgcatatcttcaagggtctgcacaactcccaaccaaaggcccccctaattctctaagacagtaaatggcat |
25253845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 25244286 - 25244401
Alignment:
| Q |
128 |
atgtcaatcaaataactatttcatgctcgagtgcgagaaatgcatgtaagagagaccatagatttatgccagaaa---agtcaacctcgggatcttttag |
224 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||| ||| || | ||| ||||||||||||||| |||| |||| |||||| |||| |
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| T |
25244286 |
atgtcaatcaaaaaactctttcatgctcgagtgcgagaaatgtatgcaa-----agcattgatttatgccagaaaagtagtctaccttaggatctcttag |
25244380 |
T |
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| Q |
225 |
gaaatgaacaatttcttcaag |
245 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
25244381 |
gtaatgaacaatttcttcaag |
25244401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 85 - 257
Target Start/End: Complemental strand, 48140926 - 48140754
Alignment:
| Q |
85 |
gcatcatacaagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataactatttcatgctcgagtgcgagaaatgcatgtaagagagacc |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
48140926 |
gcatcatacaagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataaatatttcatgctcgagtgcgagaaataaatgtaagagagacc |
48140827 |
T |
|
| Q |
185 |
atagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgc |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140826 |
atagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgc |
48140754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 48141277 - 48141206
Alignment:
| Q |
17 |
atgcatatcttcaagggtctgcacaactcccaaccaaaggcccccctaattctctaagacagtaaatggcat |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48141277 |
atgcatatcttcaagggtctgcacaactcccaaccaaaggcccccctaattctctaagacagtaaatggcat |
48141206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 48133839 - 48133954
Alignment:
| Q |
128 |
atgtcaatcaaataactatttcatgctcgagtgcgagaaatgcatgtaagagagaccatagatttatgccagaaa---agtcaacctcgggatcttttag |
224 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||||||||| ||| || | ||| ||||||||||||||| |||| |||| |||||| |||| |
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| T |
48133839 |
atgtcaatcaaaaaactctttcatgctcgagtgcgagaaatgtatgcaa-----agcattgatttatgccagaaaagtagtctaccttaggatctcttag |
48133933 |
T |
|
| Q |
225 |
gaaatgaacaatttcttcaag |
245 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
48133934 |
gtaatgaacaatttcttcaag |
48133954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 48113803 - 48113846
Alignment:
| Q |
214 |
ggatcttttaggaaatgaacaatttcttcaagttcggcctttgc |
257 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||| |||||||| |
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| T |
48113803 |
ggatctcttaggtaatgaacaatttcttcaagttccgcctttgc |
48113846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 254
Target Start/End: Complemental strand, 32012287 - 32012116
Alignment:
| Q |
83 |
tggcatcatacaagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataactatttcatgctcgagtgcgagaaatgcatgtaagagaga |
182 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||| |||| | |||||||| |
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| T |
32012287 |
tggcatcaaataagtaatcaacgagattggaatagcttaggacacatgtaaatcaaataactatttcatgctagagtgcgagaactgcaagaaagagaga |
32012188 |
T |
|
| Q |
183 |
ccatagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctt |
254 |
Q |
| |
|
||| |||| |||| |||||||| |||| |||||||||||| ||| |||||||||||||||||| ||||| |
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| T |
32012187 |
gcatggattaatgctggaaaagtctaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctt |
32012116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 94 - 257
Target Start/End: Complemental strand, 32023823 - 32023662
Alignment:
| Q |
94 |
aagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataactatttcatgctcgagtgcgagaaatgcatgtaagagagaccatagattta |
193 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||| || ||||||| ||| |||| | |
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| T |
32023823 |
aagtaatcaacgagattggaatagcttaggacacatgtaaatcaaataactatttcatgctagagtgcgagaaatgcttgcaagagag--catggattaa |
32023726 |
T |
|
| Q |
194 |
tgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgc |
257 |
Q |
| |
|
||| |||||||| |||| |||||||||||| ||| |||||||||||||||||| |||||||| |
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| T |
32023725 |
tgctggaaaagtctaccttaggatcttttaggtaatcaacaatttcttcaagttcagcctttgc |
32023662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 31791770 - 31791713
Alignment:
| Q |
199 |
gaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttg |
256 |
Q |
| |
|
||||| || |||||||||||||||||| ||| |||||||||||||||||| ||||||| |
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|
| T |
31791770 |
gaaaattctacctcgggatcttttaggtaatcaacaatttcttcaagttcagcctttg |
31791713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 154
Target Start/End: Complemental strand, 32034261 - 32034204
Alignment:
| Q |
97 |
taatcaacgagattggaatagcacagtacacatgtcaatcaaataactatttcatgct |
154 |
Q |
| |
|
|||||||||||||||||||||| || | |||||| |||||||||||||||||||||| |
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|
| T |
32034261 |
taatcaacgagattggaatagcttaggaaacatgtaaatcaaataactatttcatgct |
32034204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 31791859 - 31791792
Alignment:
| Q |
87 |
atcatacaagtaatcaacgagattggaatagcacagtacacatgtcaatcaaataactatttcatgct |
154 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| || ||| |||| ||||||||||||||| |||||| |
|
|
| T |
31791859 |
atcatataagtaagcaacgagattggaatagcttaggacaaatgtaaatcaaataactattccatgct |
31791792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 32034196 - 32034123
Alignment:
| Q |
184 |
catagatttatgccagaaaagtcaacctcgggatcttttaggaaatgaacaatttcttcaagttcggcctttgc |
257 |
Q |
| |
|
|||||||| |||| ||||| ||||||| |||||||||||| ||| |||||||||||||||||| || ||||| |
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|
| T |
32034196 |
catagattaatgctggaaaattcaaccttaggatcttttaggtaatcaacaatttcttcaagttcagcttttgc |
32034123 |
T |
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