View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_27 (Length: 258)
Name: NF9794_low_27
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 24615611 - 24615382
Alignment:
| Q |
18 |
agaaggggctccctagagaaactcctcagaattgtttcatgttatatcttgataattgtgaagagaaaaacaaagaaatcttaaaactatgagcagacga |
117 |
Q |
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| T |
24615611 |
agaaggggctccctagagaaactcctcagaattgtttcatgttatatcttgataattgtgaagagaaaaacaaagaaatcttaaaactatgagcagacga |
24615512 |
T |
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| Q |
118 |
tctagttgaattgggaagcatttctttaccatctcaattgaatccacgtttctttcttatgttc--ttcaaaatttgactctattaattattccttatat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
24615511 |
tctagttgaattgggaagcatttctttaccatctcaattgaatccacgtttctttcttatgttctatacaaaatttgactctattaattattccttatat |
24615412 |
T |
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| Q |
216 |
cttcagcccccctttctatattggaactct |
245 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24615411 |
cttcagcccccctttctatattggaactct |
24615382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 47 - 245
Target Start/End: Original strand, 24115721 - 24115921
Alignment:
| Q |
47 |
aattgtttcatgttatatcttgataattgtgaagagaaaaacaaagaaatcttaaaactatgagcagacgatctagttgaattgggaagcatttctttac |
146 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||| |||||| | |||| |||||||||| || ||||||||||||||||||||| ||||| |
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| T |
24115721 |
aattgtttcatgttatatcttgataattgtgaata-aaaaacagagaaatatctaaaccatgagcagacaatttagttgaattgggaagcatttatttac |
24115819 |
T |
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| Q |
147 |
catctcaattgaatccacg----tttctttcttatgttcttcaaaatttgactctattaattattccttatatcttcagcccccctttctatattggaac |
242 |
Q |
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||| ||||||||||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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| T |
24115820 |
cat-tcaattgaatcaatgttgctttctttcttatgttctacaaaatttgactctattaattattccttatatcttcggtgcccctttctatattgcaac |
24115918 |
T |
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| Q |
243 |
tct |
245 |
Q |
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||| |
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| T |
24115919 |
tct |
24115921 |
T |
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