View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_low_3 (Length: 574)

Name: NF9794_low_3
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9794_low_3
NF9794_low_3
[»] chr3 (9 HSPs)
chr3 (8-279)||(54734254-54734532)
chr3 (504-561)||(28154069-28154126)
chr3 (504-561)||(28188887-28188944)
chr3 (300-374)||(3540235-3540309)
chr3 (301-353)||(54528979-54529031)
chr3 (304-374)||(52311849-52311919)
chr3 (301-347)||(33450063-33450109)
chr3 (301-353)||(30533901-30533953)
chr3 (301-345)||(40517554-40517598)
[»] chr2 (4 HSPs)
chr2 (300-374)||(9539080-9539154)
chr2 (301-370)||(25389856-25389925)
chr2 (301-347)||(5037302-5037348)
chr2 (301-345)||(12965052-12965096)
[»] chr1 (8 HSPs)
chr1 (304-357)||(37260932-37260985)
chr1 (304-353)||(20447029-20447078)
chr1 (304-353)||(20532792-20532841)
chr1 (301-353)||(5119054-5119106)
chr1 (301-357)||(5602947-5603003)
chr1 (302-346)||(35392134-35392178)
chr1 (326-374)||(35577526-35577574)
chr1 (301-357)||(39650199-39650255)
[»] chr6 (3 HSPs)
chr6 (301-353)||(806548-806600)
chr6 (300-346)||(7203435-7203481)
chr6 (301-360)||(6819607-6819666)
[»] chr5 (6 HSPs)
chr5 (301-346)||(3758925-3758970)
chr5 (300-360)||(16879203-16879263)
chr5 (301-372)||(40266592-40266664)
chr5 (301-372)||(25787845-25787916)
chr5 (301-371)||(3458017-3458087)
chr5 (301-357)||(40008715-40008771)
[»] scaffold0163 (1 HSPs)
scaffold0163 (301-357)||(35779-35835)
[»] scaffold0037 (1 HSPs)
scaffold0037 (301-357)||(38317-38373)
[»] chr7 (8 HSPs)
chr7 (304-367)||(25428737-25428800)
chr7 (302-347)||(23344444-23344489)
chr7 (304-372)||(23345050-23345118)
chr7 (301-345)||(26009372-26009416)
chr7 (301-347)||(36325622-36325668)
chr7 (301-345)||(19931491-19931535)
chr7 (301-345)||(26011984-26012028)
chr7 (301-345)||(28138762-28138806)
[»] chr4 (5 HSPs)
chr4 (301-371)||(28798150-28798220)
chr4 (301-357)||(33164524-33164580)
chr4 (301-357)||(36217873-36217929)
chr4 (301-353)||(38676942-38676994)
chr4 (301-357)||(40450934-40450990)
[»] chr8 (2 HSPs)
chr8 (301-353)||(35841400-35841452)
chr8 (301-346)||(14087874-14087919)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 54734532 - 54734254
Alignment:
Q  8 aagcagagatcatgcaaaacttgactggcaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaattatcattaa 107  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734532 aagcacagatcatgcaaaactagactgccaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaattatcattaa 54734433  T
Q  108 tgaaaaagatagttcaaaatcttttannnnnnnnaaggaagttaaaaatcttttatttcctttaaatattattg----tatagataatag--atacatga 201  Q
    |||||||||||||||||||||||||         ||||||||  ||||||||||||||||||||||||||||||    ||||||||||||  ||||||||    
T  54734432 tgaaaaagatagttcaaaatctttt--tttttttaaggaagtccaaaatcttttatttcctttaaatattattgtatatatagataatagatatacatga 54734335  T
Q  202 acttgcaggggtgtgttaggaaaaagtagagtgctaaatgctaatatgaactcccaac---aagtaatgggccgtgaagct 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  54734334 acttgcaggggtgtgttaggaaaaagtagagtgctaaatgctaatatgaactcccaacaaaaagtaatgggccgtgaagct 54734254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 504 - 561
Target Start/End: Complemental strand, 28154126 - 28154069
Alignment:
Q  504 aataactgctctatgcttcttcacactttgcttttcatatgaatttggaatccaacct 561  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  28154126 aataactggtttatgcttcttcacactttgcttttcatatgaatttggaatctaacct 28154069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 504 - 561
Target Start/End: Complemental strand, 28188944 - 28188887
Alignment:
Q  504 aataactgctctatgcttcttcacactttgcttttcatatgaatttggaatccaacct 561  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||    
T  28188944 aataactggtttatgcttcttaacactttgcttttcatatgaatttggaatctaacct 28188887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 3540309 - 3540235
Alignment:
Q  300 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 374  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||| | | ||| | ||| ||||||||||||    
T  3540309 tttctgctctttaccaaaactgttttgctcgttcccaaagtaaatgtccatattgctcttgcgtaagttaacttg 3540235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 54529031 - 54528979
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||| |||||    
T  54529031 ttctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaat 54528979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 52311919 - 52311849
Alignment:
Q  304 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 374  Q
    |||||||||||||||  ||||||||| ||| ||||||||||||| | | ||||| ||| ||||||||||||    
T  52311919 tgctctttaccaaaattgttttgctcgttcccaaagtaaatgtctatattgcccctgcgtaagttaacttg 52311849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 33450109 - 33450063
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 347  Q
    |||||||| ||||| |||| |||||||||||||||||| ||||||||    
T  33450109 ttctgctcattacccaaactgttttgctcattctcaaaataaatgtc 33450063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 30533953 - 30533901
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    |||||||||||||   |||||||||||||||| ||||||||||| || |||||    
T  30533953 ttctgctctttactcgaacggttttgctcattttcaaagtaaatatccaaaat 30533901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 40517598 - 40517554
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 345  Q
    |||||||||||||| ||||||||| ||||||||  ||||||||||    
T  40517598 ttctgctctttacccaaacggtttcgctcattcctaaagtaaatg 40517554  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 300 - 374
Target Start/End: Complemental strand, 9539154 - 9539080
Alignment:
Q  300 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 374  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||  | | ||||| ||||||||||||||||    
T  9539154 tttctgctctttaccaaaactattttgctcattcccaaagtaaatgttcatattgcccctgcataagttaacttg 9539080  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 25389925 - 25389856
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaa 370  Q
    |||||||||||||  ||| || ||||||||||||||||||||||| | ||||||||| ||| | ||||||    
T  25389925 ttctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaatgcccttgcgtgagttaa 25389856  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 5037302 - 5037348
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 347  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||    
T  5037302 ttctgctctttaccaaaacggttttgttcgtttccaaagtaaatgtc 5037348  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 12965052 - 12965096
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 345  Q
    |||||||||||||| ||||| || |||||||| ||||||||||||    
T  12965052 ttctgctctttacccaaacgtttctgctcattttcaaagtaaatg 12965096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 37260985 - 37260932
Alignment:
Q  304 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  37260985 tgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgccc 37260932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 20447029 - 20447078
Alignment:
Q  304 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| |||||    
T  20447029 tgctttttacccaaactgttttgctcattctcaaagtaaatgtccaaaat 20447078  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 20532792 - 20532841
Alignment:
Q  304 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| |||||    
T  20532792 tgctttttacccaaactgttttgctcattctcaaagtaaatgtccaaaat 20532841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 5119106 - 5119054
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    |||||||||||| | ||||||||||||||||||  |||||||||||| |||||    
T  5119106 ttctgctctttatccaaacggttttgctcattcctaaagtaaatgtctaaaat 5119054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 5602947 - 5603003
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||||||||| ||| || ||||||||||| ||||||||||| | |||||||||    
T  5602947 ttctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgccc 5603003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 35392178 - 35392134
Alignment:
Q  302 tctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 346  Q
    ||||||||||||| |||  ||||||||||||| ||||||||||||    
T  35392178 tctgctctttacccaaattgttttgctcattcccaaagtaaatgt 35392134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 35577574 - 35577526
Alignment:
Q  326 gctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 374  Q
    |||||||| ||||||||| ||||||||||||| | |||| |||||||||    
T  35577574 gctcattcccaaagtaaaagtcgaaaatgcccctacatatgttaacttg 35577526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 39650199 - 39650255
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||| ||||| ||| ||||| ||||||||  |||||||||||| |||||||||    
T  39650199 ttctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgccc 39650255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 806548 - 806600
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  806548 ttctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaat 806600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 7203435 - 7203481
Alignment:
Q  300 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 346  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  7203435 tttctgctctttaccaaaactgttttgctcgttcccaaagtaaatgt 7203481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 6819666 - 6819607
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatg 360  Q
    ||||||||||||||||||| ||||||||| ||| |||| |||||||| | | ||||||||    
T  6819666 ttctgctctttaccaaaacagttttgctcgttcccaaaataaatgtccatattgcccatg 6819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 3758925 - 3758970
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 346  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  3758925 ttctgctctttaccaaaacggttttactcattcccaaagtaaatgt 3758970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 16879203 - 16879263
Alignment:
Q  300 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatg 360  Q
    |||||||| |||| | |||| ||||||| ||||||||||||||||||| ||||||| ||||    
T  16879203 tttctgctttttatccaaactgttttgcccattctcaaagtaaatgtccaaaatgctcatg 16879263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 40266664 - 40266592
Alignment:
Q  301 ttctgctcttt-accaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaact 372  Q
    ||||||||||| ||| ||| || ||||||||||| ||||||||||| | ||||||||||||| | ||||||||    
T  40266664 ttctgctcttttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaact 40266592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 372
Target Start/End: Complemental strand, 25787916 - 25787845
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaact 372  Q
    |||||||||||| | |||||||| ||||||||  |||| |||||| | ||||||||| ||||| ||||||||    
T  25787916 ttctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaact 25787845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 371
Target Start/End: Original strand, 3458017 - 3458087
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaac 371  Q
    |||||||| ||||| |||| || |||||||||  ||||||||||||| ||||| |||||||| | ||||||    
T  3458017 ttctgctcattaccgaaaccgtattgctcatttccaaagtaaatgtccaaaatacccatgcacatgttaac 3458087  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 40008715 - 40008771
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||| ||||| ||||  | | |||||||||||||||||||||| |||||||||    
T  40008715 ttctgctcattacctaaacattatcgctcattctcaaagtaaatgtctaaaatgccc 40008771  T

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Target: scaffold0163 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 35779 - 35835
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||||||| | ||||  |||||||||||||||||||||||||| |||||||||    
T  35779 ttctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaatgccc 35835  T

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Target: scaffold0037 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 38373 - 38317
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||||||||| |||| |||| |||||||| |||||||| ||||||||||||||    
T  38373 ttctgctctttacccaaactgtttcgctcattcccaaagtaattgtcgaaaatgccc 38317  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 367
Target Start/End: Original strand, 25428737 - 25428800
Alignment:
Q  304 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagt 367  Q
    ||||||||||| |||||||| ||||||||| |||||||||| || ||||||||| ||| |||||    
T  25428737 tgctctttacccaaacggttctgctcattcccaaagtaaatatccaaaatgcccctgcgtaagt 25428800  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 23344444 - 23344489
Alignment:
Q  302 tctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 347  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||    
T  23344444 tctgctctttacccaaacggttttgctcatttttaaagtaaatgtc 23344489  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 23345118 - 23345050
Alignment:
Q  304 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaact 372  Q
    ||||||||||| ||||| |||||||||||| |||| |||||||  | | ||||||||| ||||||||||    
T  23345118 tgctctttacccaaacgattttgctcattcccaaaataaatgttcatattgcccatgcgtaagttaact 23345050  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 26009372 - 26009416
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 345  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||    
T  26009372 ttctgctctttacccaaacgattttgctcattcccaaagtaaatg 26009416  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 347
Target Start/End: Original strand, 36325622 - 36325668
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 347  Q
    |||||||||||||  |||| ||||||||| |||||||||||||||||    
T  36325622 ttctgctctttactcaaacagttttgctcgttctcaaagtaaatgtc 36325668  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 19931491 - 19931535
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 345  Q
    |||||||||||| | ||| |||||||||| |||||||||||||||    
T  19931491 ttctgctctttatctaaatggttttgctcgttctcaaagtaaatg 19931535  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 26012028 - 26011984
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 345  Q
    |||||||||||||| ||||| ||||  ||||||||||||||||||    
T  26012028 ttctgctctttacccaaacgattttaatcattctcaaagtaaatg 26011984  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 345
Target Start/End: Original strand, 28138762 - 28138806
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 345  Q
    |||||||||||||| ||| | |||||||||||| |||||||||||    
T  28138762 ttctgctctttacccaaatgattttgctcattcccaaagtaaatg 28138806  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 371
Target Start/End: Complemental strand, 28798220 - 28798150
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaac 371  Q
    |||||||| ||||| |||| || | |||||||||||||||||||||| ||||||||| |||| | ||||||    
T  28798220 ttctgctcattacccaaacagtatcgctcattctcaaagtaaatgtccaaaatgcccctgcacatgttaac 28798150  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 33164580 - 33164524
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||| ||||| ||| ||||  |||||||||||||||||||||| |||||||||    
T  33164580 ttctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgccc 33164524  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 36217873 - 36217929
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||||||||  ||| |||||| ||||||| ||||||||| ||| |||||||||    
T  36217873 ttctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgccc 36217929  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 38676942 - 38676994
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    |||| ||||||| | |||||||||||||||||| |||| |||||||| |||||    
T  38676942 ttctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaat 38676994  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 40450934 - 40450990
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 357  Q
    |||||||| ||||| |||| || | |||||||| ||||||||| |||||||||||||    
T  40450934 ttctgctcattacctaaacagtatcgctcattcccaaagtaaaagtcgaaaatgccc 40450990  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 35841400 - 35841452
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 353  Q
    ||||||||||||||||||| ||| |||||||| | |||||||||||| |||||    
T  35841400 ttctgctctttaccaaaacagttgtgctcatttttaaagtaaatgtccaaaat 35841452  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Complemental strand, 14087919 - 14087874
Alignment:
Q  301 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 346  Q
    |||||||||||||  |||||||||| |||||||||||| |||||||    
T  14087919 ttctgctctttactcaaacggttttactcattctcaaaataaatgt 14087874  T

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