View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_low_32 (Length: 250)

Name: NF9794_low_32
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9794_low_32
NF9794_low_32
[»] chr4 (2 HSPs)
chr4 (129-219)||(11138394-11138479)
chr4 (1-60)||(11138268-11138325)
[»] chr5 (1 HSPs)
chr5 (193-231)||(39994994-39995032)
[»] chr1 (1 HSPs)
chr1 (197-229)||(28461141-28461173)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 11138394 - 11138479
Alignment:
Q  129 atgtctgacaagctctatattataatataaagagcatctcatatactctcattcatcgtctattcatcttttgatcaatatcattttctat 219  Q
    |||||| ||||||||||||| ||||||||  |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  11138394 atgtctcacaagctctatat-ataatata--gagcatctcatatactc--atttatcgtctattcatcttttgatcaatatcattttctat 11138479  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11138268 - 11138325
Alignment:
Q  1 tcttcctttttgttagacaacctacctccactttttgtttataggggtgctcgtggggtg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  11138268 tcttcctttttgttagacaacctacctccactttttgtttataggg--gctcgtggggtg 11138325  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 39994994 - 39995032
Alignment:
Q  193 catcttttgatcaatatcattttctatgaattttactct 231  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  39994994 catcttttgatcaatataattttctatgaattttactct 39995032  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 28461141 - 28461173
Alignment:
Q  197 ttttgatcaatatcattttctatgaattttact 229  Q
    ||||||||||||| |||||||||||||||||||    
T  28461141 ttttgatcaatataattttctatgaattttact 28461173  T

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