View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_low_39 (Length: 239)

Name: NF9794_low_39
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9794_low_39
NF9794_low_39
[»] chr4 (3 HSPs)
chr4 (4-91)||(11137970-11138058)
chr4 (89-178)||(11137728-11137817)
chr4 (186-223)||(11137542-11137579)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 11138058 - 11137970
Alignment:
Q  4 ggaactcaagtttcaaagtcaaagaagttt-taaaacatggtttcaatacataagcattggctcgggaaatttctcattttggttcata 91  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11138058 ggaactcaagtttcaaagtcaaagaagtttctaaaacatggtttcaatacataagcattggctcgggaaatttctcattttggttcata 11137970  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 11137817 - 11137728
Alignment:
Q  89 atagtattgattttaggctttttatttctacacttggggtgtcgaaggggttgtaggccgtagcattgtccttttttgattctcattcgt 178  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  11137817 atagtattgattttaggctttttatttctacacttagggtgtcgaagtggttgtaggccgtagcattgtccttatttgattctcattcgt 11137728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 11137579 - 11137542
Alignment:
Q  186 gttccacaatcatagttaatttgatttcgtaatgaaat 223  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11137579 gttccacaatcatagttaatttgatttcgtaatgaaat 11137542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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