View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_41 (Length: 238)
Name: NF9794_low_41
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 12013359 - 12013183
Alignment:
| Q |
18 |
actacaagatgtaatccttcagtccctgatcatgttcattcgtaaggattcattgagagggaaattgttttgtttctatatgttaagtattttgtttttg |
117 |
Q |
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| T |
12013359 |
actacaagaggtaatccttcagtccctgatcatgttcattcgtaaggattcattgagagggaaattattttgtttctatacgttgagtattttgtttttg |
12013260 |
T |
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| Q |
118 |
taatacaatttcccttcagtggtattagacccacttaggaaatcttgagtcagttttggtgttttaccggtttaatat |
195 |
Q |
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| T |
12013259 |
taatacgatttcccttcagtggtattagacccacttacgaaatctt-agtcggttttggtgttttaccggtttaatat |
12013183 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 22182243 - 22182180
Alignment:
| Q |
29 |
taatccttcagtccctgatcatgttcattcgtaaggattcattgagagggaaattgttttgttt |
92 |
Q |
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|||| ||||| |||| ||||||||||||| |||||||| |||||| ||||||||| |||||||| |
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| T |
22182243 |
taattcttcaatcccagatcatgttcatttgtaaggatccattgaaagggaaattattttgttt |
22182180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 7662024 - 7661954
Alignment:
| Q |
18 |
actacaagatgtaatccttcagtccctgatcatgttcattcgtaaggattcattgagagggaaattgtttt |
88 |
Q |
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||||||||||||||| ||| |||| ||||||||||| || ||||||| |||||| ||||||||| |||| |
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| T |
7662024 |
actacaagatgtaatactttgatcccggatcatgttcactcataaggatccattgaaagggaaattatttt |
7661954 |
T |
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