View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_low_44 (Length: 238)

Name: NF9794_low_44
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9794_low_44
NF9794_low_44
[»] chr7 (15 HSPs)
chr7 (1-219)||(4653534-4653752)
chr7 (1-202)||(4845895-4846096)
chr7 (1-186)||(4711971-4712156)
chr7 (3-219)||(4663007-4663223)
chr7 (31-219)||(4630971-4631159)
chr7 (19-191)||(4783726-4783898)
chr7 (19-191)||(4816155-4816327)
chr7 (1-191)||(4636871-4637061)
chr7 (30-219)||(4863965-4864154)
chr7 (1-219)||(4697053-4697271)
chr7 (1-182)||(4666952-4667133)
chr7 (115-202)||(4672831-4672918)
chr7 (2-101)||(4672691-4672790)
chr7 (1-107)||(4643685-4643791)
chr7 (128-219)||(4643848-4643939)
[»] chr4 (1 HSPs)
chr4 (1-199)||(18925625-18925823)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 4653534 - 4653752
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4653534 actctatcacctttatccttgatacgccaatcaaattcacaaaaatgtaacctgaccatataagtaaatgttgagtcaacttcgaaattccaagttacat 4653633  T
Q  101 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4653634 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcgatgtaatttggaattgtattgtttttatagttgagatg 4653733  T
Q  201 atttacaaaatcacttgat 219  Q
    |||||||||||||||||||    
T  4653734 atttacaaaatcacttgat 4653752  T

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Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 4846096 - 4845895
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    ||||||||||||||||||||| || ||  |||||| ||||||||||||||||| ||||| ||||||||  | || |||||||||||||||||||||||||    
T  4846096 actctatcacctttattcttggtaagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaacttcgaaattccaagttacat 4845997  T
Q  101 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatg 200  Q
    | ||||||||||| |||| | ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||  |||||| |||||    
T  4845996 tataatcctctgtcacatactttccataacttcttgcagttaagtatacagcttctggtgcagtgtaatttggaatagtattgtttaaatagtttagatg 4845897  T
Q  201 at 202  Q
    ||    
T  4845896 at 4845895  T

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Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 4712156 - 4711971
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    |||||||||||||||||||||||| ||  |||||| ||||||||||||||||| ||||| ||||||||  | || ||||||| |||||||||||||||||    
T  4712156 actctatcacctttattcttgataagcagatcaaactcacaaaaatgtaaccttaccatataagtaaaactagaatcaactttgaaattccaagttacat 4712057  T
Q  101 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgttt 186  Q
    | ||||||||||| |||| ||||||||||||||| ||||| | ||||||||||||||||||| ||||||| ||||| |||||||||    
T  4712056 tataatcctctgtcacatccattccataacttcttgcagtaaagtatacagcttctggtgcagtgtaattgggaatggtattgttt 4711971  T

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Target: chr7; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 219
Target Start/End: Original strand, 4663007 - 4663223
Alignment:
Q  3 tctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattg 102  Q
    |||||||||||||||  |||||  |  |||||| ||||||||||||||||| |||||||| ||||| |  || ||||| || |||||||||||||||||     
T  4663007 tctatcacctttatttatgatattcggatcaaactcacaaaaatgtaaccttaccatgtatgtaaaagaagaatcaacctcaaaattccaagttacatta 4663106  T
Q  103 taatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgat 202  Q
    ||||||||||| |||| | |||||||| |||| ||||||| |||||||| |||||||||| ||||||||||||| |||||||||  |||||| |||||||    
T  4663107 taatcctctgtcacatactttccataatttcttgcagttaagtatacagtttctggtgcagtgtaatttggaatggtattgtttaaatagtttagatgat 4663206  T
Q  203 ttacaaaatcacttgat 219  Q
     | ||||||||||||||    
T  4663207 ctccaaaatcacttgat 4663223  T

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Target: chr7; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 4630971 - 4631159
Alignment:
Q  31 tcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcctctgtgacattcattccataac 130  Q
    ||||| |||||||||||||| || ||||| |||||||| |  || |||||||| ||||||||||||||||||||||||| |||  ||| |||||||||||    
T  4630971 tcaaactcacaaaaatgtaatcttaccatataagtaaaagaagaatcaacttcaaaattccaagttacattgtaatcctttgttgcatccattccataac 4631070  T
Q  131 ttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 219  Q
    |||||||||||| ||| ||||||||||||||| ||||||||| ||| |||||||||  |||||| ||||||| | |||||| |||||||    
T  4631071 ttctcgcagttaagtaaacagcttctggtgcagtgtaatttgaaatggtattgtttaaatagtttagatgatgtccaaaataacttgat 4631159  T

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Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 4783898 - 4783726
Alignment:
Q  19 ttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcctctgtgacat 118  Q
    |||||| |||||||||| ||||||||||||||||| ||||| |||||||| |  || |||||||| || ||||||||||||||||||||||||||  |||    
T  4783898 ttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcat 4783799  T
Q  119 tcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttata 191  Q
     ||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||   ||||||||||||    
T  4783798 acattccataacttcttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgtttttata 4783726  T

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Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 4816327 - 4816155
Alignment:
Q  19 ttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcctctgtgacat 118  Q
    |||||| |||||||||| ||||||||||||||||| ||||| |||||||| |  || |||||||| || ||||||||||||||||||||||||||  |||    
T  4816327 ttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacattgtaatcctctgtctcat 4816228  T
Q  119 tcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttata 191  Q
     ||||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||   ||||||||||||    
T  4816227 acattccataacttcttgcagttaagtaaacaccttctggtgcaatgtaatttggaatgacattgtttttata 4816155  T

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Target: chr7; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 4636871 - 4637061
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    ||||||||||||||||  |||||| |||||||||| ||||||||||||||||| ||||| |||||||| |  || |||||||| || |||||||||||||    
T  4636871 actctatcacctttatagttgatatgccaatcaaactcacaaaaatgtaaccttaccatataagtaaaagcagaatcaacttcaaagttccaagttacat 4636970  T
Q  101 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttata 191  Q
    | ||||||| |||  ||| |||||| |||||||| ||||||| ||| ||| |||||||||||||||||||||||||   ||||||||||||    
T  4636971 tataatcctttgtctcatacattccgtaacttcttgcagttaagtacacaacttctggtgcaatgtaatttggaatgacattgtttttata 4637061  T

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Target: chr7; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 4863965 - 4864154
Alignment:
Q  30 atcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacattgtaatcctctgtgacattcattccataa 129  Q
    |||||| ||||||||||||||||| ||||| ||||||||  | || |||||||| |||||||||||||||||||| ||||||||| ||| |  ||| |||    
T  4863965 atcaaactcacaaaaatgtaaccttaccatataagtaaaattagaatcaacttcaaaattccaagttacattgtactcctctgtggcatactgtccgtaa 4864064  T
Q  130 cttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 219  Q
    ||||| ||||||| ||| ||| ||||||||||| |||||||| |||| || ||||||| |||||| ||||||| |  |||||||||||||    
T  4864065 cttcttgcagttaagtacacaacttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatgatgtttaaaatcacttgat 4864154  T

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Target: chr7; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4697271 - 4697053
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    |||||||||||| |||| |||||| ||  |||||| ||||||||||| ||||| ||||| ||||||||       |||||||||||||||||||||||||    
T  4697271 actctatcacctatatttttgatatgctgatcaaactcacaaaaatgcaaccttaccatataagtaaaaccaacatcaacttcgaaattccaagttacat 4697172  T
Q  101 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatg 200  Q
    || ||||||||||  ||| || ||||  |||||| ||||||| ||| ||||||||||||||| |||||||| |||| || ||||||| |||||| |||||    
T  4697171 tgaaatcctctgtctcatccaatccacgacttcttgcagttaagtacacagcttctggtgcagtgtaattttgaatggtgttgttttcatagttaagatg 4697072  T
Q  201 atttacaaaatcacttgat 219  Q
    || |  |||||||||||||    
T  4697071 atgtttaaaatcacttgat 4697053  T

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Target: chr7; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 4666952 - 4667133
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    ||||||||||||  |||||||||| |||||||||| ||||||||||| ||||| ||||| ||||||||  | || |||||||  |||||||| || ||||    
T  4666952 actctatcacctggattcttgatatgccaatcaaactcacaaaaatgcaaccttaccatataagtaaaaatagaatcaactttaaaattccatgtcacat 4667051  T
Q  101 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtatt 182  Q
    | |||| |||| || ||| ||||||||||||||| ||||||| ||| ||| ||||||||||| ||||||||||||| |||||    
T  4667052 tataattctctttggcatccattccataacttcttgcagttaagtacacaacttctggtgcagtgtaatttggaatagtatt 4667133  T

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Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 4672831 - 4672918
Alignment:
Q  115 acattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgat 202  Q
    ||||| |||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||| |||||||||  | ||||||||||||    
T  4672831 acatttattccataacttcttgcagttacgtaaacagcttctggtgcagtgtaatttggaatggtattgtttaaaaagttgagatgat 4672918  T

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Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 101
Target Start/End: Original strand, 4672691 - 4672790
Alignment:
Q  2 ctctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacatt 101  Q
    ||||||||||| ||||  ||||| |||  ||||| ||||||||||||||||| ||||| ||||| || |  || ||||| || |||||||||||||||||    
T  4672691 ctctatcacctgtattaatgataagcctgtcaaactcacaaaaatgtaaccttaccatataagtgaaagaagaatcaacctcaaaattccaagttacatt 4672790  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 4643685 - 4643791
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    |||||||||||||||||  | |||  |  |||||| ||||||||||||||||| ||||| ||||||||    || ||||| || ||||||||||||||||    
T  4643685 actctatcacctttatttgttatatccggatcaaactcacaaaaatgtaaccttaccatataagtaaaaccagaatcaacctcaaaattccaagttacat 4643784  T
Q  101 tgtaatc 107  Q
    || ||||    
T  4643785 tgaaatc 4643791  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 4643848 - 4643939
Alignment:
Q  128 aacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagatgatttacaaaatcacttgat 219  Q
    ||||||| |||||||  || ||||||||||||||| ||||||||||||| | ||| |||  |||||| ||||||| | || ||||| |||||    
T  4643848 aacttcttgcagttaaataaacagcttctggtgcagtgtaatttggaatggcattttttaaatagtttagatgatgttcataatcatttgat 4643939  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 18925823 - 18925625
Alignment:
Q  1 actctatcacctttattcttgatacgccaatcaaattcacaaaaatgtaacctgaccatgtaagtaaatgttgagtcaacttcgaaattccaagttacat 100  Q
    ||||||||||||| |||||| ||| |||||||||| || |||||||| || || ||||  |||||||| |  || |||||||| ||||||||||||||||    
T  18925823 actctatcaccttgattctttatatgccaatcaaactcgcaaaaatgcaatcttaccaaataagtaaaggcagaatcaacttcaaaattccaagttacat 18925724  T
Q  101 tgtaatcctctgtgacattcattccataacttctcgcagttaggtatacagcttctggtgcaatgtaatttggaattgtattgtttttatagttgagat 199  Q
    | ||||||| |||  ||| ||||||||||||||| ||||||| ||||||| ||||||||||  |||| |||||||| ||||||||| ||||||||||||    
T  18925723 tataatcctttgtcgcatccattccataacttcttgcagttaagtatacaacttctggtgccgtgtagtttggaatggtattgtttatatagttgagat 18925625  T

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