View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_47 (Length: 232)
Name: NF9794_low_47
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_47 |
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| [»] chr5 (12 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 26033316 - 26033528
Alignment:
| Q |
20 |
ggtaactgacacaaaaagaacgaatacaaattaatgacatgatcaacaaaataatcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26033316 |
ggtaactgacacaaaaagaacgaatacaaattaatgacatgatcaacaaaataatcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaag |
26033415 |
T |
|
| Q |
120 |
aaagtaaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcaccatactttttatagaacacaaaaacttttgtct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26033416 |
aaagtaaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcaccatactttttatagaacacaaaaacttttgttt |
26033515 |
T |
|
| Q |
220 |
ctgcttctccact |
232 |
Q |
| |
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|| ||||| |||| |
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| T |
26033516 |
cttcttcttcact |
26033528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 38180893 - 38180746
Alignment:
| Q |
73 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
166 |
Q |
| |
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|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
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| T |
38180893 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38180794 |
T |
|
| Q |
167 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttt |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38180793 |
cttagaccatttgaattcaccatactttatatagaactcaaaaacttt |
38180746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 38190238 - 38190385
Alignment:
| Q |
73 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataaga---aattacctcctcagccag |
166 |
Q |
| |
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|||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
38190238 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38190337 |
T |
|
| Q |
167 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttt |
214 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38190338 |
cttagaccatttgaattcaccatactttatatagaactcaaaaacttt |
38190385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 38208117 - 38207970
Alignment:
| Q |
73 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
166 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
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| T |
38208117 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38208018 |
T |
|
| Q |
167 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttt |
214 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38208017 |
cttagaccatttgaattcaccatactttatatagaactcaaaaacttt |
38207970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 38217463 - 38217610
Alignment:
| Q |
73 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataaga---aattacctcctcagccag |
166 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| |
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| T |
38217463 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38217562 |
T |
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| Q |
167 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttt |
214 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38217563 |
cttagaccatttgaattcaccatactttatatagaactcaaaaacttt |
38217610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 38456253 - 38456106
Alignment:
| Q |
73 |
atcaacaaggtaaaacacaagtgatagatcaatatttcaaattaaagaa---agtaaaagaagtaaagcatgaataagaa---attacctcctcagccag |
166 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||| | |||||| |
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| T |
38456253 |
atcaacaaaatataacacaagtgatagatgaatatttgaaattaaagaagaaagtaaaagaagtaaagcatgaataagaagaaattacctcatgagccag |
38456154 |
T |
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| Q |
167 |
cttagaccatttgaattcaccatactttttatagaacacaaaaacttt |
214 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
38456153 |
cttagaccatttgaattcaccatactttatatagaactcaaaaacttt |
38456106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 38447456 - 38447402
Alignment:
| Q |
18 |
caggtaactgacacaaaaagaacgaatacaaattaatgacatgatcaacaaaata |
72 |
Q |
| |
|
|||| ||||| |||||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
38447456 |
caggcaactgtcacaaaaataacgaatgcaaattaatgacatgatcaaaaaaata |
38447402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 38180913 - 38180882
Alignment:
| Q |
41 |
gaatacaaattaatgacatgatcaacaaaata |
72 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38180913 |
gaatacaaattaatgacatgatcaacaaaata |
38180882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 38190218 - 38190249
Alignment:
| Q |
41 |
gaatacaaattaatgacatgatcaacaaaata |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
38190218 |
gaatacaaattaatgacatgatcaacaaaata |
38190249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 38208137 - 38208106
Alignment:
| Q |
41 |
gaatacaaattaatgacatgatcaacaaaata |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
38208137 |
gaatacaaattaatgacatgatcaacaaaata |
38208106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 38217443 - 38217474
Alignment:
| Q |
41 |
gaatacaaattaatgacatgatcaacaaaata |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
38217443 |
gaatacaaattaatgacatgatcaacaaaata |
38217474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Complemental strand, 38456273 - 38456242
Alignment:
| Q |
41 |
gaatacaaattaatgacatgatcaacaaaata |
72 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
38456273 |
gaatacaaattaatgacatgatcaacaaaata |
38456242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 53351679 - 53351739
Alignment:
| Q |
35 |
aagaacgaatacaaattaatgacatgatcaacaaaataatcaacaaggtaaaacacaagtg |
95 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
53351679 |
aagaacaaatacaaattaatgacatgatcaccaaaataatcaacaaggtataacacaagtg |
53351739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 53351796 - 53351887
Alignment:
| Q |
95 |
gatagatcaatatttcaaattaaagaaagt-aaaagaagtaaagcatgaataagaaattacctcctcagccagcttagaccatttgaattcacca |
188 |
Q |
| |
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||||||| |||||||||||| ||| ||| ||||||||||||||||||| | ||| |||| | |||||||||||||||||||||||||||| |
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| T |
53351796 |
gatagataaatatttcaaataaaacaaaaagaaaagaagtaaagcatgaagataaaa---cctcttgagccagcttagaccatttgaattcacca |
53351887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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