View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_5 (Length: 528)
Name: NF9794_low_5
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 5950904 - 5950393
Alignment:
| Q |
1 |
attgggatccttctgaaattgctactatgattgaagcagagatatcaatgctacttccagataggacgaacagttatccagacgacgagaataatgcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5950904 |
attgggatccttctgaaattgctactatgattgaagcagagatatcaatgctacttccagataggacgaacagttatcaagacgacgagaataatgcaag |
5950805 |
T |
|
| Q |
101 |
tcctcgtcgttatcatcattttccctctgtctcttctgtttcatcgtcacaagaatcattgtcgggtgcagtcaatagagctgatgacatatcaaatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5950804 |
tcctcgtcgttatcatcattttccctctgtctcttctgtttcatcgtcacaagaatcattgtcgggtgcagtcaatagagttgatgacatatcaaatgga |
5950705 |
T |
|
| Q |
201 |
tatcgctggcaccatggtacgtcttctttttcccttcacaagctatgttgtggatgtcctatttcaatgatgtcctgaaatgattgacctgataaactgt |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950704 |
tatcgctggcaccctggtacgtcttctttttcccttcacaagctatgttgtggatgtcctatttcaatgatgtcctgaaatgattgacctgataaactgt |
5950605 |
T |
|
| Q |
301 |
ttttgtagatgatacgttcgatgatgacagctcgttatgctcttcatatacatatttcgacttgaatttttgttctgtggacgaccagtatcataacgtg |
400 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950604 |
ttttgtagatgatacgtttgattatgacagctcgttatgctcttcatatacatattccgacttgaatttttgttctgtggacgaccagtatcataacgtg |
5950505 |
T |
|
| Q |
401 |
gcttctacaagaaacgataaacatcccatcatgagtcacaagtgtacaaggttttcacatggtgaagatcaactcactttgaaccggtgcaaaattttag |
500 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5950504 |
gcttctacaagaaacaataaacatcccatcatgagtcacaagtgtacaaggttttcacatggtgaagatcaactcactttgaaccggtgcaaaattttag |
5950405 |
T |
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| Q |
501 |
ctaaaccacaag |
512 |
Q |
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|||||||||||| |
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| T |
5950404 |
ctaaaccacaag |
5950393 |
T |
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