View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9794_low_52 (Length: 205)
Name: NF9794_low_52
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_52 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 3749270 - 3749100
Alignment:
| Q |
20 |
tgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttct |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3749270 |
tgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaaattatctactttggatctttct |
3749171 |
T |
|
| Q |
120 |
ttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3749170 |
ttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgtg |
3749100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 5858382 - 5858213
Alignment:
| Q |
20 |
tgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttct |
119 |
Q |
| |
|
|||||||||||| | ||||||||| ||| |||||||||||| |||| ||||||||| | |||||| ||| |||| |||||||| |||||||||||| |
|
|
| T |
5858382 |
tgaatctcttcatagaattagagtgagtgacacaaacttctctggaccattacctagctctattggcaacttgaggcagttatctgaattggatctttct |
5858283 |
T |
|
| Q |
120 |
ttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttgaatctgt |
189 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
5858282 |
ttttgtcaatttaatggaacccttccaaattcattgtcaaacctcacacacctcagttacttggatctgt |
5858213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 5565118 - 5564956
Alignment:
| Q |
20 |
tgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttct |
119 |
Q |
| |
|
|||||||||||| | |||| ||| ||| |||||||||||| |||||||||||||| | |||||| || |||| | ||||||| ||||||||||| |
|
|
| T |
5565118 |
tgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttcc |
5565019 |
T |
|
| Q |
120 |
ttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg |
182 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
5565018 |
agttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttg |
5564956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 5605410 - 5605283
Alignment:
| Q |
45 |
agtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctactttggatctttctttttgtcaattcaatggaacacttc |
144 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| | |||||| ||| |||| | |||||| ||| ||||||| ||||||||| |||||||||||| |
|
|
| T |
5605410 |
agtaacacaagcttctctggagcattacctagctctattggcaacttgaggcacttatctgaattgtatctttccagttgtcaatttaatggaacacttt |
5605311 |
T |
|
| Q |
145 |
caaattcattgtcaaacctcacacaact |
172 |
Q |
| |
|
| |||||||||||||||||||||||||| |
|
|
| T |
5605310 |
ccaattcattgtcaaacctcacacaact |
5605283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 5852983 - 5853057
Alignment:
| Q |
108 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg |
182 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| |
|
|
| T |
5852983 |
ttggatctttctaattctcaatttaatggaacacttcccaattcattttcaaacctaacagaactaagttacttg |
5853057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 5886252 - 5886385
Alignment:
| Q |
36 |
attagagtaagtaacacaaacttctatggagcattacctaacattattggaaacctgagaaagttatctact-ttggatctttctttttgtcaattcaat |
134 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||| || |||| ||| || ||| ||| ||| ||| || || |||||| ||||||| |||||| | || |
|
|
| T |
5886252 |
attagagtgagtaacacaagcttctctggagcatttccaaacaatatcggtaacatgacaaactta-ctcctattggatatttctttctgtcaactatat |
5886350 |
T |
|
| Q |
135 |
ggaacacttccaaattcattgtcaaacctcacaca |
169 |
Q |
| |
|
||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
5886351 |
ggaacacttcccaattcactgtcaaatctcacaca |
5886385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 5895169 - 5895233
Alignment:
| Q |
108 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact |
172 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
5895169 |
ttggatctttcttactgtcaactatatggaacacttcccaattcactgtcaaacctcacacaact |
5895233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 5553441 - 5553367
Alignment:
| Q |
108 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg |
182 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||| |||| ||||||||| |
|
|
| T |
5553441 |
ttggatctttctaattctcaatataatggaacacttcccaattcattttcaaacctaacagaactaagttacttg |
5553367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 252329 - 252378
Alignment:
| Q |
123 |
tgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaact |
172 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
252329 |
tgtcaatttaatggtacacttcccaattcattgtcaaacctcacaaaact |
252378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 1483285 - 1483224
Alignment:
| Q |
108 |
ttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacaca |
169 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
1483285 |
ttggatcttccttactgtcaatttaatggaacacttcccaattcaatgtccaacctcacaca |
1483224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University