View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9794_low_7 (Length: 445)

Name: NF9794_low_7
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9794_low_7
NF9794_low_7
[»] chr6 (23 HSPs)
chr6 (1-184)||(13727317-13727500)
chr6 (1-185)||(21280550-21280734)
chr6 (1-184)||(21479499-21479683)
chr6 (1-186)||(20711636-20711821)
chr6 (1-186)||(27788606-27788789)
chr6 (1-172)||(33774122-33774294)
chr6 (12-184)||(30832443-30832614)
chr6 (1-185)||(19737611-19737793)
chr6 (22-184)||(27314097-27314259)
chr6 (1-186)||(28075788-28075975)
chr6 (11-184)||(17353969-17354142)
chr6 (11-102)||(1155849-1155940)
chr6 (1-94)||(24711007-24711100)
chr6 (13-103)||(34397874-34397964)
chr6 (11-170)||(235157-235317)
chr6 (1-96)||(2477590-2477685)
chr6 (1-96)||(6159443-6159538)
chr6 (1-91)||(21183686-21183776)
chr6 (116-184)||(24710914-24710982)
chr6 (1-79)||(4036953-4037031)
chr6 (1-95)||(20611795-20611889)
chr6 (17-102)||(30121783-30121868)
chr6 (133-186)||(20611924-20611977)
[»] chr2 (34 HSPs)
chr2 (206-372)||(12603185-12603355)
chr2 (1-185)||(4505895-4506079)
chr2 (1-178)||(6965008-6965183)
chr2 (1-184)||(3155218-3155401)
chr2 (1-184)||(12337365-12337549)
chr2 (11-173)||(8907007-8907170)
chr2 (1-189)||(29939776-29939963)
chr2 (26-178)||(40636164-40636315)
chr2 (16-178)||(34693991-34694152)
chr2 (16-178)||(34716403-34716564)
chr2 (12-184)||(3953018-3953188)
chr2 (1-188)||(24410438-24410627)
chr2 (1-186)||(27506657-27506841)
chr2 (1-185)||(7162785-7162968)
chr2 (1-184)||(26716129-26716313)
chr2 (1-170)||(10762499-10762666)
chr2 (350-427)||(12603371-12603448)
chr2 (26-185)||(5952635-5952791)
chr2 (1-170)||(9046030-9046199)
chr2 (71-172)||(1396629-1396730)
chr2 (1-103)||(16097009-16097111)
chr2 (2-103)||(24035544-24035645)
chr2 (17-103)||(13800543-13800630)
chr2 (1-103)||(21665699-21665801)
chr2 (1-103)||(28425709-28425811)
chr2 (1-101)||(38400799-38400899)
chr2 (63-168)||(8327681-8327785)
chr2 (11-103)||(12134039-12134131)
chr2 (17-102)||(16227368-16227453)
chr2 (62-103)||(22727456-22727497)
chr2 (60-103)||(7742132-7742176)
chr2 (63-102)||(42029208-42029247)
chr2 (59-95)||(10252475-10252511)
chr2 (66-102)||(11952588-11952624)
[»] chr5 (48 HSPs)
chr5 (1-173)||(34756292-34756464)
chr5 (12-184)||(15480006-15480176)
chr5 (1-186)||(27079013-27079199)
chr5 (1-186)||(16591988-16592172)
chr5 (11-184)||(36187795-36187967)
chr5 (11-178)||(2274902-2275069)
chr5 (1-178)||(19523201-19523378)
chr5 (11-184)||(31194528-31194699)
chr5 (11-186)||(22986471-22986646)
chr5 (11-186)||(38869277-38869451)
chr5 (1-170)||(9364293-9364462)
chr5 (1-170)||(16198723-16198892)
chr5 (1-178)||(30854331-30854508)
chr5 (11-103)||(28822338-28822430)
chr5 (1-184)||(16799240-16799425)
chr5 (1-170)||(27924084-27924253)
chr5 (21-170)||(7338021-7338170)
chr5 (1-98)||(40389537-40389634)
chr5 (11-170)||(7670936-7671104)
chr5 (1-103)||(1366522-1366624)
chr5 (1-103)||(23284058-23284160)
chr5 (11-103)||(31881430-31881521)
chr5 (2-103)||(36868872-36868973)
chr5 (1-103)||(11242314-11242416)
chr5 (1-95)||(24395741-24395835)
chr5 (1-103)||(33037782-33037884)
chr5 (1-103)||(34425905-34426007)
chr5 (1-102)||(14318382-14318483)
chr5 (11-103)||(2024638-2024730)
chr5 (11-95)||(10543685-10543769)
chr5 (1-95)||(2530901-2530995)
chr5 (11-169)||(40794257-40794415)
chr5 (119-184)||(40389453-40389518)
chr5 (59-103)||(606214-606258)
chr5 (15-95)||(26718953-26719033)
chr5 (15-95)||(26988697-26988777)
chr5 (12-103)||(10407474-10407565)
chr5 (11-101)||(22648734-22648824)
chr5 (1-102)||(2412090-2412191)
chr5 (1-102)||(41911614-41911715)
chr5 (12-96)||(17344969-17345053)
chr5 (116-184)||(23283943-23284011)
chr5 (59-103)||(27530543-27530587)
chr5 (116-183)||(28822253-28822320)
chr5 (142-188)||(29143416-29143462)
chr5 (116-186)||(31881346-31881416)
chr5 (60-96)||(22875003-22875039)
chr5 (63-103)||(35080766-35080806)
[»] chr3 (35 HSPs)
chr3 (1-185)||(54619120-54619304)
chr3 (2-185)||(38681010-38681193)
chr3 (4-184)||(36715942-36716123)
chr3 (11-184)||(27078486-27078660)
chr3 (11-184)||(27084283-27084457)
chr3 (1-185)||(8073256-8073439)
chr3 (1-184)||(21582776-21582960)
chr3 (1-184)||(47467689-47467872)
chr3 (1-170)||(34290568-34290737)
chr3 (1-185)||(42098806-42098990)
chr3 (1-183)||(3953816-3953997)
chr3 (1-170)||(37168372-37168541)
chr3 (1-184)||(43207157-43207338)
chr3 (1-170)||(44708482-44708650)
chr3 (1-178)||(53149238-53149415)
chr3 (11-178)||(36605980-36606146)
chr3 (11-170)||(53506815-53506975)
chr3 (2-172)||(18372485-18372658)
chr3 (1-184)||(50939152-50939334)
chr3 (11-184)||(54407073-54407249)
chr3 (18-173)||(50258553-50258708)
chr3 (11-103)||(9878686-9878778)
chr3 (1-95)||(32319162-32319256)
chr3 (1-95)||(8420331-8420425)
chr3 (122-184)||(29620364-29620426)
chr3 (1-103)||(54574826-54574928)
chr3 (63-170)||(48157196-48157302)
chr3 (17-103)||(26279563-26279649)
chr3 (1-67)||(29620423-29620489)
chr3 (38-91)||(23641329-23641382)
chr3 (11-95)||(28689368-28689452)
chr3 (27-103)||(42453435-42453511)
chr3 (116-184)||(48720429-48720497)
chr3 (11-102)||(25855437-25855527)
chr3 (11-102)||(49393105-49393195)
[»] chr8 (32 HSPs)
chr8 (11-184)||(3048435-3048608)
chr8 (1-184)||(2952137-2952322)
chr8 (1-178)||(30883331-30883509)
chr8 (1-178)||(13534612-13534787)
chr8 (1-178)||(13624152-13624327)
chr8 (1-173)||(45475819-45475990)
chr8 (1-184)||(37430076-37430259)
chr8 (11-173)||(5860671-5860835)
chr8 (1-188)||(23606544-23606730)
chr8 (1-185)||(23798178-23798362)
chr8 (1-184)||(42600784-42600967)
chr8 (1-170)||(10917393-10917561)
chr8 (15-184)||(41879197-41879364)
chr8 (1-95)||(8102914-8103008)
chr8 (1-103)||(7944521-7944623)
chr8 (1-169)||(41677106-41677275)
chr8 (1-80)||(5942698-5942777)
chr8 (1-103)||(15167414-15167516)
chr8 (11-103)||(5973106-5973198)
chr8 (11-103)||(11290196-11290288)
chr8 (116-184)||(20003728-20003796)
chr8 (11-103)||(34789861-34789953)
chr8 (1-95)||(15078760-15078854)
chr8 (1-94)||(5721561-5721654)
chr8 (1-102)||(39332405-39332506)
chr8 (59-103)||(8646265-8646309)
chr8 (59-102)||(9108553-9108596)
chr8 (23-102)||(30674403-30674482)
chr8 (59-95)||(34868184-34868220)
chr8 (1-95)||(25561502-25561594)
chr8 (59-96)||(23941097-23941134)
chr8 (63-103)||(38009151-38009191)
[»] chr7 (36 HSPs)
chr7 (11-184)||(18776683-18776856)
chr7 (1-184)||(29077222-29077404)
chr7 (1-178)||(8171463-8171639)
chr7 (12-184)||(12596207-12596376)
chr7 (21-173)||(26254015-26254167)
chr7 (1-188)||(23550984-23551171)
chr7 (11-170)||(10329341-10329500)
chr7 (1-196)||(19692096-19692291)
chr7 (1-184)||(20091197-20091381)
chr7 (11-184)||(28749722-28749895)
chr7 (1-184)||(38414793-38414976)
chr7 (1-170)||(8239689-8239857)
chr7 (1-103)||(10955486-10955588)
chr7 (1-184)||(24525599-24525785)
chr7 (1-184)||(48983756-48983944)
chr7 (1-184)||(47984885-47985070)
chr7 (22-102)||(33162338-33162418)
chr7 (116-184)||(25010543-25010611)
chr7 (11-102)||(9021799-9021890)
chr7 (10-102)||(6765680-6765772)
chr7 (11-103)||(23744808-23744900)
chr7 (37-103)||(2611260-2611326)
chr7 (1-103)||(7398453-7398555)
chr7 (1-95)||(36891580-36891674)
chr7 (116-181)||(40357300-40357365)
chr7 (11-95)||(23859085-23859169)
chr7 (1-95)||(12981328-12981422)
chr7 (45-103)||(27237421-27237479)
chr7 (23-101)||(36902924-36903002)
chr7 (16-102)||(21763586-21763672)
chr7 (23-96)||(18201161-18201234)
chr7 (11-95)||(20153213-20153297)
chr7 (60-103)||(12419493-12419536)
chr7 (14-53)||(40357414-40357453)
chr7 (46-102)||(9014177-9014233)
chr7 (1-45)||(25010435-25010479)
[»] chr4 (52 HSPs)
chr4 (1-172)||(38209520-38209691)
chr4 (1-184)||(34768492-34768674)
chr4 (1-178)||(47128994-47129170)
chr4 (1-184)||(54780784-54780968)
chr4 (1-184)||(32915392-32915575)
chr4 (1-170)||(43455463-43455631)
chr4 (1-184)||(2790659-2790841)
chr4 (1-184)||(34027586-34027768)
chr4 (1-168)||(37777156-37777323)
chr4 (11-184)||(32128601-32128774)
chr4 (26-184)||(17679432-17679589)
chr4 (59-184)||(55255322-55255447)
chr4 (1-184)||(10978907-10979092)
chr4 (11-172)||(1105549-1105709)
chr4 (1-184)||(5128758-5128942)
chr4 (11-184)||(48209257-48209436)
chr4 (1-185)||(19498511-19498692)
chr4 (25-171)||(10428129-10428273)
chr4 (11-184)||(37514676-37514848)
chr4 (1-184)||(16845028-16845210)
chr4 (12-184)||(16882313-16882484)
chr4 (2-186)||(35465115-35465297)
chr4 (22-168)||(51964736-51964884)
chr4 (1-168)||(54083176-54083342)
chr4 (1-172)||(35779257-35779425)
chr4 (11-93)||(13460224-13460306)
chr4 (34-103)||(51691913-51691982)
chr4 (1-184)||(40089523-40089714)
chr4 (21-184)||(16922245-16922409)
chr4 (59-193)||(23508418-23508553)
chr4 (1-96)||(27112037-27112132)
chr4 (12-103)||(52468304-52468395)
chr4 (38-103)||(9578662-9578728)
chr4 (1-82)||(4167910-4167991)
chr4 (23-103)||(39655252-39655332)
chr4 (63-170)||(38352197-38352303)
chr4 (11-96)||(36118463-36118548)
chr4 (11-96)||(36178689-36178774)
chr4 (11-103)||(10041998-10042090)
chr4 (23-103)||(39329390-39329470)
chr4 (1-96)||(2135326-2135421)
chr4 (1-103)||(24396941-24397043)
chr4 (116-185)||(24969718-24969787)
chr4 (13-53)||(23509846-23509886)
chr4 (113-168)||(2975358-2975413)
chr4 (59-102)||(24614018-24614061)
chr4 (1-103)||(24969444-24969536)
chr4 (61-103)||(30507120-30507162)
chr4 (1-94)||(37744916-37745010)
chr4 (11-103)||(36362869-36362961)
chr4 (58-93)||(15735154-15735189)
chr4 (134-186)||(9578573-9578625)
[»] chr1 (41 HSPs)
chr1 (1-185)||(44655754-44655937)
chr1 (1-184)||(14146313-14146495)
chr1 (2-181)||(16140069-16140247)
chr1 (1-178)||(50881443-50881618)
chr1 (1-184)||(5027562-5027746)
chr1 (11-184)||(6771814-6771989)
chr1 (1-185)||(17168969-17169152)
chr1 (1-173)||(23185440-23185611)
chr1 (1-184)||(5316693-5316875)
chr1 (23-184)||(22865378-22865538)
chr1 (1-187)||(4971533-4971718)
chr1 (1-170)||(19955730-19955898)
chr1 (59-184)||(27906646-27906771)
chr1 (11-172)||(21740864-21741027)
chr1 (1-173)||(3406431-3406603)
chr1 (1-173)||(3440217-3440389)
chr1 (11-191)||(40501700-40501880)
chr1 (11-169)||(1366812-1366968)
chr1 (1-184)||(9172940-9173123)
chr1 (1-184)||(9180922-9181105)
chr1 (10-168)||(6889633-6889789)
chr1 (10-168)||(6891479-6891635)
chr1 (1-103)||(27559650-27559752)
chr1 (1-167)||(41697072-41697237)
chr1 (1-168)||(51607374-51607540)
chr1 (11-188)||(13913394-13913572)
chr1 (1-102)||(38547035-38547136)
chr1 (1-103)||(39134720-39134823)
chr1 (1-103)||(45758507-45758609)
chr1 (11-96)||(33170782-33170867)
chr1 (116-181)||(34247154-34247219)
chr1 (1-102)||(6221691-6221791)
chr1 (11-102)||(26803971-26804059)
chr1 (1-95)||(43235774-43235870)
chr1 (11-103)||(38853545-38853637)
chr1 (60-103)||(17322621-17322664)
chr1 (14-53)||(34247066-34247105)
chr1 (2-103)||(5533326-5533428)
chr1 (13-95)||(35392295-35392376)
chr1 (63-186)||(44895721-44895845)
chr1 (117-169)||(50146424-50146476)
[»] scaffold0070 (1 HSPs)
scaffold0070 (1-184)||(1345-1527)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-184)||(106540-106723)
[»] scaffold1590 (1 HSPs)
scaffold1590 (11-103)||(257-349)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-96)||(173516-173611)
[»] scaffold0001 (2 HSPs)
scaffold0001 (60-184)||(183121-183244)
scaffold0001 (1-49)||(181921-181969)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-96)||(38927-39022)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-95)||(206496-206590)
[»] scaffold0182 (1 HSPs)
scaffold0182 (12-102)||(23993-24083)
[»] scaffold1320 (1 HSPs)
scaffold1320 (1-95)||(1356-1450)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-103)||(230858-230960)
[»] scaffold0227 (1 HSPs)
scaffold0227 (59-102)||(16125-16168)
[»] scaffold0022 (2 HSPs)
scaffold0022 (23-103)||(40109-40191)
scaffold0022 (23-103)||(138169-138251)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 5e-66; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 13727500 - 13727317
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  13727500 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 13727401  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  13727400 tttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 13727317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 21280550 - 21280734
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  21280550 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 21280649  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  21280650 tttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 21280734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 21479499 - 21479683
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  21479499 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 21479598  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||    
T  21479599 tttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccaaattctcagagacggccctg 21479683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 20711821 - 20711636
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  20711821 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctct 20711722  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    |||         || ||||||||||||| | || |||||||||||| ||||| |||||||||||||||||||| |||| |||||||    
T  20711721 tttaaaaaaaaatacgttttgattttatgactgacctcttttcattcccagaaccgagcctccgaattctcagggacgtccctgat 20711636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 27788789 - 27788606
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||    
T  27788789 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaaaattgctct 27788690  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    |||         || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || |||| |||||||    
T  27788689 tttaaaaaaa--tacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccctgat 27788606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 33774122 - 33774294
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||| | | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||    
T  33774122 gttcctcatgtatacggtagtcattttcacatttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattactct 33774221  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctca 172  Q
    |||         ||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||    
T  33774222 tttaaaaaaaaattatgttttgattttattactggcctcttttcattttcagagccgagcctccgaattctca 33774294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 30832614 - 30832443
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnn 111  Q
    |||||||||||||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||| || |||||            
T  30832614 atacggtagtcattttcatctctgggtgtaccacatatatacggcatcttgtatttattttttaaaaaatgtaaatagaacatcgcgctttttaaaaaaa 30832515  T
Q  112 ttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
     || ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |||| |||||    
T  30832514 -tacgttttgattttatcactggcctcttttcattcccagagccgagccttcgaattctcagggacggccctg 30832443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 19737793 - 19737611
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  19737793 gttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatctttaaaaaaatataaatagaacattgctct 19737694  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||          |  |||||||||||||| ||||||||||||| | | |||||||| ||| | ||||||||| |||||||||||    
T  19737693 tttaaaaaaaa-aacattttgattttatcactggcctcttttca-tcctagagccgaaccttcaaattctcagggacgaccctga 19737611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 27314259 - 27314097
Alignment:
Q  22 cattttcacctcttggtgtaccgcatatatacagcatcttgtatttatc-ttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgtttt 120  Q
    |||||||||||||  ||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||         || |||||    
T  27314259 cattttcacctctgagtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tacgtttt 27314161  T
Q  121 gattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||||||||| ||||||||||||||| |||||| |||||||||||||| |||| |||| |||||    
T  27314160 gattttatcactggcctcttttcattcccagagtcgagcctccgaattttcagggacggccctg 27314097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28075788 - 28075975
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||| ||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |    
T  28075788 gttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgcttt 28075887  T
Q  101 tt---tnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    ||             || ||||||||||| ||| ||||||||||||||| |||||||||||||||| |||||| || ||||||||||||    
T  28075888 ttaaaataaaaaaaatacgttttgattttttcactggcctcttttcattcccagagccgagcctccaaattcttag-gacgaccctgat 28075975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 17353969 - 17354142
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||| ||||||||||||| | | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||| ||||           
T  17353969 tatacgatagtcattttcacatttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctttttttaaaaaa 17354068  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
      || ||||||||||||||| || |||||||||||| | |||| |||||||||||||||| || |||| |||||    
T  17354069 aatacgttttgattttatcactgacctcttttcattccaagagtcgagcctccgaattcttagggacggccctg 17354142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 1155940 - 1155849
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    |||||||||||||||||||||||| | |||||||||||||||   || ||||||||||||||||||||||||||||||||||||||||||||    
T  1155940 tatacggtagtcattttcacctctggatgtaccgcatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttt 1155849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 24711100 - 24711007
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacat 94  Q
    ||||||||  ||||||||||||||||||||||||  ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  24711100 gttcctcatgtatacggtagtcattttcacctctgagtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacat 24711007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 34397874 - 34397964
Alignment:
Q  13 tacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||| |||||||||| |||| | ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||    
T  34397874 tacgatagtcatttttacctttaggtgtaccgcatatatacgtcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 34397964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 235317 - 235157
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatataca--gcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnn 108  Q
    ||||||||||||||||||| || | ||||||| | ||||||||   ||| ||| |||||||||||||||||||||||||||| ||||||| ||||         
T  235317 tatacggtagtcattttcatctttgggtgtacggtatatatacccggcaccttatatttatcttttaaaaaatataaatagatcattgct-ttttaaaaa 235219  T
Q  109 nnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
        || ||||||||||||||| ||| |||||||||||  || |||||| ||||||||||||    
T  235218 aaaatacgttttgattttatcactggtctcttttcattctcatagccgaacctccgaattct 235157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2477685 - 2477590
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    ||||||||  ||||||||||| |||||||| | |||||||| ||||||||||   || ||||||||||||||||||||||| ||||| ||||||||    
T  2477685 gttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 2477590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 6159443 - 6159538
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    |||||| | |||||||||||| |||| ||||| |   ||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||    
T  6159443 gttccttatatatacggtagtgatttccacctttgaatgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaacattg 6159538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 21183776 - 21183686
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaa 91  Q
    ||||||||  ||||||||||| ||||||| || | |||||||| |||||||||   |  |||||||||||||||||||||| |||||||||    
T  21183776 gttcctcatgtatacggtagtgattttcaactttgggtgtaccacatatatacgctactttgtatttatcttttaaaaaatttaaatagaa 21183686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 24710982 - 24710914
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||||||||||| |  |||||||||||| || |||| |||||||||||||||||| |||| |||||    
T  24710982 gttttgattttatcactaacctcttttcattccctgagctgagcctccgaattctcagggacggccctg 24710914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 4036953 - 4037031
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaa 79  Q
    |||||||| |||||||||||| || || |||| | ||||||||  |||||||| ||| ||||||||||||| |||||||    
T  4036953 gttcctcatatatacggtagtgatctttacctttgggtgtaccatatatatacggcaccttgtatttatctcttaaaaa 4037031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 20611795 - 20611889
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  ||||||||||| |||||||||| | | |||  || ||||||||  || |||||||||||| |||||||||| ||| |||||||||    
T  20611795 gttcctcatgtatacggtagtgattttcacctttggatgtgtcgtatatatacgacaccttgtatttatcgtttaaaaaatttaagtagaacatt 20611889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 30121783 - 30121868
Alignment:
Q  17 gtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||| |||||||||| | | |||| ||||||||||   || ||||||||||| ||||||||||| |||||| ||||||| |||||    
T  30121783 gtagtgattttcacctttggatgtatcgcatatatatgacaccttgtatttattttttaaaaaatttaaataaaacattgttcttt 30121868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 20611924 - 20611977
Alignment:
Q  133 ggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    |||||||||||| || |||||||||||||||||||||  ||  |||||||||||    
T  20611924 ggcctcttttcacttacagagccgagcctccgaattcgtaggaacgaccctgat 20611977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 126; Significance: 8e-65; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 206 - 372
Target Start/End: Original strand, 12603185 - 12603355
Alignment:
Q  206 aaattattatctatgtaagtgtgttggtgtccgtgtcgtatctgcgtatgtgttcgtgcttcatggattgcatgtctaaag----gtagttatttgaaca 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    ||||||||||||||     
T  12603185 aaattattatctatgtaagtgtgttggtgtccgtgtcgtatctgtgtatgtgttcgtgcttcatgaattgcgtgtctaaaggtacgtagttatttgaacg 12603284  T
Q  302 agcttaaaaggagagtcctttatttgtttaacgtaaaattacaatgacaagcattcacaccatgctcttat 372  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  12603285 agcttataaggagagtcctttatttgtttaacgtaaaattataatgacaagcattcacaccatgcttttat 12603355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 4505895 - 4506079
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  4505895 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 4505994  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  4505995 tttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 4506079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 6965008 - 6965183
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  6965008 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctct 6965107  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||        |||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  6965108 tttaaaaaaaatta--ttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 6965183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 3155218 - 3155401
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  3155218 gttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 3155317  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||        ||||||||| ||||||||| || |||||||||||||  | |||||||||||||||||||||| |||| |||||    
T  3155318 tttaaaaaaaattatgttttaattttatcactgacctcttttcatttttaaagccgagcctccgaattctcagggacggccctg 3155401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 12337549 - 12337365
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||| ||||||||   || ||||||||||||||||||||||||||||||||||||||||||    
T  12337549 gttcctcatgtatacggtagtcattttcacctctgggtgtaccacatatatatgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 12337450  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  12337449 tttaaaaaaaaattatattttgattttatcactggcctcttttcatttccagagccgagccttcgaattctcagggacggccctg 12337365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 8907170 - 8907007
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnn 109  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||| |||||||           
T  8907170 tatacggtagtcatttttacctctgggtgtaccgcatatatacggcgccttgtatttatcttttaaaaaatataaatagaacattactcttttaaaaaaa 8907071  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
      ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  8907070 aattatgttttgattttatcactggcctcttttcattttcagagccgagcctccgaattctcag 8907007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 29939963 - 29939776
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | ||||||||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||    
T  29939963 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttgtaaaaaatataaatagaacattgctct 29939864  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgattaa 189  Q
    |||         || ||||||||||||||| || |||||||| ||| |||||||||||||| ||||||||||| ||||  |||||||||    
T  29939863 tttaaaaaaaa-tacgttttgattttatcactgacctctttttattcccagagccgagccttcgaattctcagggacggtcctgattaa 29939776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 40636164 - 40636315
Alignment:
Q  26 ttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattt 125  Q
    ||||||||| ||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  40636164 ttcacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tatgttttgattt 40636262  T
Q  126 tatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    ||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||    
T  40636263 tatcactggcctcttttcattcccagagctgagcctccgaattctcagggacg 40636315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 34693991 - 34694152
Alignment:
Q  16 ggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttat 115  Q
    |||||||||||| |||||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||         ||     
T  34693991 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tac 34694089  T
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||||||||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||    
T  34694090 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacg 34694152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 34716403 - 34716564
Alignment:
Q  16 ggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttat 115  Q
    |||||||||||| |||||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||         ||     
T  34716403 ggtagtcattttgacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaa-tac 34716501  T
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||||||||||||||  |||||||||||||||||||| |||| ||||||||||||||| ||||    
T  34716502 gttttgattttatcacgggcctcttttcatttccagatccgaacctccgaattctcagggacg 34716564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 12 - 184
Target Start/End: Original strand, 3953018 - 3953188
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnn 111  Q
    |||||||| |||||||||||||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||| | |||||             
T  3953018 atacggtaatcattttcacctctgggtgtaccgcatgtatacggcaccttgtatttatcttttaaaaaatataaatagaacatcggtcttt--aaaaaaa 3953115  T
Q  112 ttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
     ||  |||||||||||||| || |||||||||||||||| |||||||||||| ||||||||| ||||||||||    
T  3953116 atacattttgattttatcactgacctcttttcatttccaaagccgagcctccaaattctcagggacgaccctg 3953188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 24410438 - 24410627
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| | |    
T  24410438 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 24410537  T
Q  101 tt--tnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgatta 188  Q
    ||            || ||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||| || |||| |||||||||    
T  24410538 ttaaaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccaaaaccgagcctccgaattcttagggacggccctgatta 24410627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 27506841 - 27506657
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||| ||||||||||| |||| | |||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||| |    
T  27506841 gttcctcatgtatacagtagtcatttttacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgct-t 27506743  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    |||         || ||||||||||||||| |||||||||||||||  |||||||||||||||||||||| || |||| |||||||    
T  27506742 ttttttaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccctgat 27506657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 7162785 - 7162968
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| |||||||||||||||||||||||||  || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  7162785 gttcctcatatatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 7162884  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||          |  |||| ||||||||| ||||||||||||||| || |||| |||||| |||| |||||| |||| ||||||    
T  7162885 tttaaaaaaaa-gacattttaattttatcactggcctcttttcattccccgagctgagccttcgaaatctcagggacggccctga 7162968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 26716129 - 26716313
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatctttt-aaaaaatataaatagaacattgctc 99  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||  ||| ||| |||||||||||| |||||||||||||||||||||||||    
T  26716129 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatatggcaccttatatttatcttttaaaaaaatataaatagaacattgctc 26716228  T
Q  100 ttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||         || ||||||||||||||| || |||||||||||| ||| |||||||||  |||||||| || |||| |||||    
T  26716229 ttttaaaaaaaaatacgttttgattttatcactgacctcttttcattcccaaagccgagccaacgaattcttagggacggccctg 26716313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 10762666 - 10762499
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||| ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  10762666 gttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatataccgcaccttatatttatcttttaaaaaatataaatagaacattgctct 10762567  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    ||           | ||||| ||||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  10762566 ttaaaaaaaaa--acgttttaattttatcactggcctcttttcattcccagagctgagcctccaaattct 10762499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 350 - 427
Target Start/End: Original strand, 12603371 - 12603448
Alignment:
Q  350 aagcattcacaccatgctcttatgttaactggctgaacatggcctaatggaatcatggacacgttcttgaactccatg 427  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12603371 aagcattcacaccatgctcttatgtttactggctgaacatggcctaatggaatcatggacacgttcttgaactccatg 12603448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 26 - 185
Target Start/End: Complemental strand, 5952791 - 5952635
Alignment:
Q  26 ttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattt 125  Q
    ||||||||| |||||||||||||||||| ||| |||||||||||||||||||||  ||||||| ||||||||||||||         || ||||||||||    
T  5952791 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaa--ataaatataacattgctcttttaaaaaaaa-tacgttttgattt 5952695  T
Q  126 tatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    ||||| ||||||||||||||| | |||||||| ||||||||||||||| |||||| ||||    
T  5952694 tatcattggcctcttttcattccgagagccgaacctccgaattctcagggacgacactga 5952635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9046030 - 9046199
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatctttt-aaaaaatataaatagaacattgctc 99  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| |||||||||||| |||||||||||||||||||||| ||    
T  9046030 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaaatataaatagaacattgttc 9046129  T
Q  100 ttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    ||||         || ||||||||||||||| ||||||||||| ||| ||||||| |||||  ||||||||    
T  9046130 ttttaaaaacaa-tacgttttgattttatcactggcctcttttaattcccagagctgagccaacgaattct 9046199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 172
Target Start/End: Complemental strand, 1396730 - 1396629
Alignment:
Q  71 ttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  1396730 ttttaaaaaatataaatagaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagtcgagcctccgaattct 1396631  T
Q  171 ca 172  Q
    ||    
T  1396630 ca 1396629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16097009 - 16097111
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| |||||| |||||||||| | |||||||  ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||    
T  16097009 gttcctcatgtataaggtagtaattttcacctttgggtgtacatcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttct 16097108  T
Q  101 ttt 103  Q
    |||    
T  16097109 ttt 16097111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 24035645 - 24035544
Alignment:
Q  2 ttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 101  Q
    |||||||  ||| ||||||| |||||||||| | |||||| ||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  24035645 ttcctcatgtatgcggtagtgattttcacctttaggtgtatcgcatttatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctt 24035546  T
Q  102 tt 103  Q
    ||    
T  24035545 tt 24035544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 13800630 - 13800543
Alignment:
Q  17 gtagtcattttcacctcttgg-tgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||| |||||||||| |||| |||| ||||||||||| ||| ||| ||||||||||||||||||| |||||||||||||| ||||||    
T  13800630 gtagtgattttcaccttttgggtgtatcgcatatatacggcaccttatatttatcttttaaaaaatttaaatagaacattgttctttt 13800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 21665801 - 21665699
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||||||| | ||| |||| | |||||||||  || | ||||||||||||||||||||| |||||||||||||| |||    
T  21665801 gttcctcatgtatacggtagtgattttcacattttgatgtatcacatatatacgacaccgtgtatttatcttttaaaaaatttaaatagaacattgttct 21665702  T
Q  101 ttt 103  Q
    |||    
T  21665701 ttt 21665699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28425811 - 28425709
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| ||||| |||||| |||||||| | | ||||||| ||||||||||  || ||||||||||||||||||||  | |||||||||||||| |||    
T  28425811 gttcctcatatatatggtagtgattttcacatttgggtgtactgcatatatacgacaccttgtatttatcttttaaaatttttaaatagaacattgttct 28425712  T
Q  101 ttt 103  Q
    |||    
T  28425711 ttt 28425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38400799 - 38400899
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||||||||| |   |||| ||||||||||   || ||||||||||||||||||||||| |||||||||||||| |||    
T  38400799 gttcctcatgtatacggtagtgattttcacctttgaatgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaatagaacattgttct 38400898  T
Q  101 t 101  Q
    |    
T  38400899 t 38400899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 8327681 - 8327785
Alignment:
Q  63 tatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctc 162  Q
    |||||||||||||||||||||||||||| ||||||| ||||         || ||||||||||||||| ||  ||||||||||||||||| | |||||||    
T  8327681 tatttatcttttaaaaaatataaatagatcattgct-tttttaaaaaaaatacgttttgattttatcactgatctcttttcatttccagaactgagcctc 8327779  T
Q  163 cgaatt 168  Q
    ||||||    
T  8327780 cgaatt 8327785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 12134131 - 12134039
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| |||||||| | | |||||| ||||||||||| | | |||||||||||||||||||   | |||||||||||||| ||||||    
T  12134131 tatacggtagtgattttcacttttgggtgtatcgcatatatacggtaccttgtatttatcttttaaattttttaaatagaacattgttctttt 12134039  T

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Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 16227453 - 16227368
Alignment:
Q  17 gtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||| ||||||| || | |||||| | |||||||||  || ||||||||||||||||||||||| ||||||||| |||| |||||    
T  16227453 gtagtgattttcatctatcggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaaaattgttcttt 16227368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 103
Target Start/End: Complemental strand, 22727497 - 22727456
Alignment:
Q  62 gtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||||||||||||| |||||||||||||| ||||||    
T  22727497 gtatttatcttttaaaaaatttaaatagaacattgttctttt 22727456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 7742176 - 7742132
Alignment:
Q  60 ttgtatttatcttttaaaaaa-tataaatagaacattgctctttt 103  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  7742176 ttgtatttatcttttaaaaaaatataaatagaacattgttctttt 7742132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 42029208 - 42029247
Alignment:
Q  63 tatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  42029208 tatttatcttttaaaaaatttaaatagaacattgttcttt 42029247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 10252475 - 10252511
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  10252475 cttgtatttatcttttaaaaaatttaaattgaacatt 10252511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 11952624 - 11952588
Alignment:
Q  66 ttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    |||||||||||||||| |||||||||||||| |||||    
T  11952624 ttatcttttaaaaaatttaaatagaacattgttcttt 11952588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 48)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 34756464 - 34756292
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  34756464 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 34756365  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
    |||        ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34756364 tttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcag 34756292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 15480176 - 15480006
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnn 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| | |||||             
T  15480176 atacggtagtcattttcacctctgggtgtaccgcatatatacgacatcttgtatttatcttttaaaaaatataaatagaacatcggtcttt--aaaaaaa 15480079  T
Q  112 ttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
     |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  15480078 atatgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 15480006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 27079013 - 27079199
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||| |||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  27079013 gttcctcatgtatacagtagtcattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 27079112  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    |||          || ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||| |||| |||||||    
T  27079113 tttaaaaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattctcagggacggccctgat 27079199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 16592172 - 16591988
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||||  || | ||||||||||||||| ||||||||||||||||||||||||    
T  16592172 gttcctcatatatacggtagtcattttcacctctgggtgtaccgcatatatacgacaccctgtatttatcttttagaaaatataaatagaacattgctct 16592073  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    |||         |||||||||||||||||| |||||||||||||||  ||||||||||||||| ||||||||  |||| |||||||    
T  16592072 tttaaaaaaaa-tatgttttgattttatcattggcctcttttcattctcagagccgagcctccaaattctcaaggacggccctgat 16591988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 36187967 - 36187795
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||           
T  36187967 tatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatattttaaaaaatataaatagaacatcgctcttttaaaaaaa 36187868  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
       | ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  36187867 a-aacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 36187795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 2274902 - 2275069
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||||||||||||||||||||| ||||||| ||||||||||   | |||||||||||||||||||||||||||||||||||| ||||||||           
T  2274902 tatacggtagtcattttcacctctgggtgtactgcatatatacgataccttgtatttatcttttaaaaaatataaatagaacatcgctcttttaaaaaaa 2275001  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
      || ||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| ||||    
T  2275002 aatacgttttgattttatcactggcctcttttcattcccagaaccgagcctccgaattctcagggacg 2275069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 19523201 - 19523378
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  |||||    
T  19523201 gttcctcatgtatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacaccgctct 19523300  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    ||           | ||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  19523301 ttaaaaaaaaaacacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattctcagggacg 19523378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 31194699 - 31194528
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    ||||||||||| |||||||||||| ||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||           
T  31194699 tatacggtagt-attttcacctctgggtttaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaagaa 31194601  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
      || ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||| |||| |||||    
T  31194600 a-tacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattttcagggacggccctg 31194528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 22986646 - 22986471
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||||||||||||||||||| | ||||||||||||||||||  ||  |||||||| ||||||||||||||| |||||||||||||||||||           
T  22986646 tatacggtagtcattttcacctatgggtgtaccgcatatatacgacactttgtatttgtcttttaaaaaatattaatagaacattgctcttttaaaaaaa 22986547  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
     ||| ||||||||||||||| |||||||||||||||  |||||| |||||||||||||||||  |||| |||||||    
T  22986546 attacgttttgattttatcactggcctcttttcattctcagagctgagcctccgaattctcacggacggccctgat 22986471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 11 - 186
Target Start/End: Complemental strand, 38869451 - 38869277
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||||||||||||||||||| | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||           
T  38869451 tatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 38869352  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
      || ||||||||||||| | || |||||||||||| ||||||||||||||||||||||| || |||| |||||||    
T  38869351 a-tacgttttgattttataactgacctcttttcattcccagagccgagcctccgaattcttagggacggccctgat 38869277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9364293 - 9364462
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| |    
T  9364293 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgcttt 9364392  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |           || ||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  9364393 taaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagctgagcctccgaattct 9364462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 16198892 - 16198723
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||| |||||||||||  || ||| |||||||||||||||||||||||||||||||||||| |    
T  16198892 gttcctcatgtatacggtagtcattttcacctttgggtgtatcgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgcttt 16198793  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    ||          || ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  16198792 ttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattct 16198723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 30854331 - 30854508
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||| |||||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  30854331 gttcctcatgtatacgatagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 30854430  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||         || ||||| ||||||||  || ||| |||||||| |||||||||||||||| |||| |||| ||||    
T  30854431 tttaaaaaaaaatacgttttaattttatcgctgaccttttttcattcccagagccgagcctccaaattatcagggacg 30854508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 28822430 - 28822338
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  28822430 tatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctctttt 28822338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 16799425 - 16799240
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaaca-ttgctc 99  Q
    ||||||||  ||||||||| |||||||||||| | |||||||||||||||||| ||| ||| ||||||| ||||||||||||||||||||||| || |||    
T  16799425 gttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacggcaccttatatttattttttaaaaaatataaatagaacatttactc 16799326  T
Q  100 tttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||          || ||||||||||||||| || | |||||||||| ||||||||||||||||||||||| || |||| |||||    
T  16799325 ttttaaaaaaaaaatacgttttgattttatcactgacatcttttcattcccagagccgagcctccgaattcttagggacggccctg 16799240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 27924084 - 27924253
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||| | | |||||||||||||||| ||| ||| |||||||||||||||||||||||||||  ||||||| |    
T  27924084 gttcctcatgtatacggtagtcatttttacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaataggtcattgcttt 27924183  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         || ||||||||||||||| |||||||||||||||  ||||| |||||| |||||||||    
T  27924184 tttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagtcgagcccccgaattct 27924253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 7338021 - 7338170
Alignment:
Q  21 tcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgtttt 120  Q
    |||||||||||| | ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||           | |||||    
T  7338021 tcattttcacctttaggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctctttaaaaaaaaaaaacgtttt 7338120  T
Q  121 gattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||||||||  || |||||||||||| | |||||||||||||| ||||||    
T  7338121 gattttatccttgacctcttttcattcctagagccgagcctccaaattct 7338170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40389634 - 40389537
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgct 98  Q
    |||||||| | ||||||||||||||||||||| | | ||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||    
T  40389634 gttcctcataaatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgct 40389537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 170
Target Start/End: Original strand, 7670936 - 7671104
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatctttt-aaaaaatataaatagaacattgctctttt------ 103  Q
    |||||||||||||||||||||| | ||||||||| | |||||| ||| ||| |||||||||||| |||||||||||||||||||||||| ||||          
T  7670936 tatacggtagtcattttcacctttgggtgtaccgtaaatatacggcaccttatatttatcttttaaaaaaatataaatagaacattgcttttttttttta 7671035  T
Q  104 --nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
               || ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  7671036 aaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattct 7671104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 1366624 - 1366522
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| |||||||||||| |||||||| | | |||||| |||||||||||  ||||||||||||||||| |||||||| |||||||||||||| |||    
T  1366624 gttcctcatatatacggtagtgattttcacatttaggtgtatcgcatatataccacatcttgtatttatcttataaaaaatttaaatagaacattgttct 1366525  T
Q  101 ttt 103  Q
    |||    
T  1366524 ttt 1366522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 23284160 - 23284058
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||||| || | ||||||||||||||||||  || ||||||||||   |||||||||||||||||||||||||||||    
T  23284160 gttcctcatgtatacggtagtcattttcatctttgggtgtaccgcatatatacgacaccttgtatttagtctttaaaaaatataaatagaacattgctct 23284061  T
Q  101 ttt 103  Q
    |||    
T  23284060 ttt 23284058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 31881521 - 31881430
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| ||||||| |||| | ||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||    
T  31881521 tatacggtagt-attttcatctctggatgttccgcatatatacggcaccgtgtatttatcttttaaaaaatataaatagaacattgctctttt 31881430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 36868973 - 36868872
Alignment:
Q  2 ttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 101  Q
    |||||||  ||||||||||| |||||||| | | |||||||| |||||||||  || ||||||||||||||||||||||  |||||||||||||| ||||    
T  36868973 ttcctcatgtatacggtagtgattttcacatttgggtgtaccacatatatacgacaccttgtatttatcttttaaaaaaattaaatagaacattgttctt 36868874  T
Q  102 tt 103  Q
    ||    
T  36868873 tt 36868872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 11242416 - 11242314
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||| || || | | |||| | |||||||||| ||| |||||||||||||||||||||  |||||||||||||| |||    
T  11242416 gttcctcatgtatacggtagtgatttccatctttggttgtatcacatatatacatcattttgtatttatcttttaaaaaaattaaatagaacattgttct 11242317  T
Q  101 ttt 103  Q
    |||    
T  11242316 ttt 11242314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 24395741 - 24395835
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  |||||||| || |||||||||| | | ||||  | ||||||||| || ||||||||||||||||||||||| |||||||||||||    
T  24395741 gttcctcatctatacggtggtgattttcacctttggatgtattgtatatatacaacaccttgtatttatcttttaaaaaatttaaatagaacatt 24395835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 33037782 - 33037884
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||| |  ||||||||| | |||||||  |||||||||   ||||||||||||||||||||||||| |||||| ||||||| |||    
T  33037782 gttcctcatgtatacggtaatggttttcacctttgggtgtacaacatatatacgatatcttgtatttatcttttaaaaaatttaaataaaacattgttct 33037881  T
Q  101 ttt 103  Q
    |||    
T  33037882 ttt 33037884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 34425905 - 34426007
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||| | ||||| | || | |||||| | ||||||||| ||| |||||||||||||||||||||||  ||||||||||||| |||    
T  34425905 gttcctcatgtatacggtaatgattttaatctttaggtgtatcacatatatacggcaccttgtatttatcttttaaaaaattgaaatagaacattgttct 34426004  T
Q  101 ttt 103  Q
    |||    
T  34426005 ttt 34426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 14318483 - 14318382
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||||||  | | | |||| | |||||||||  || ||||||||||||||||||||||| |||||||||||||| |||    
T  14318483 gttcctcatgtatacggtagtgattttcatttttggatgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttct 14318384  T
Q  101 tt 102  Q
    ||    
T  14318383 tt 14318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 2024730 - 2024638
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||| |||||| ||||||| || | |||||| | ||||||||| |||  |||||||||||||| ||||||| |||||||||||||| ||||||    
T  2024730 tatatggtagtgattttcatctttgggtgtatcacatatatacggcacattgtatttatctttaaaaaaatttaaatagaacattgttctttt 2024638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 10543685 - 10543769
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||||| |||||||||| | | |||| |||||||||||| || ||| ||||||||||||||||||| ||| | |||||||    
T  10543685 tatacggtagtgattttcacctttggatgtatcgcatatatacatcaccttatatttatcttttaaaaaatttaagtggaacatt 10543769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 2530995 - 2530901
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  ||||| ||||| |||||||||| | | ||||||| ||||||||  ||  |||||||||||||||||||||  |||||||||||||    
T  2530995 gttcctcatgtatacagtagtgattttcacctttggatgtaccgtatatatacgacacattgtatttatcttttaaaaaacttaaatagaacatt 2530901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 40794415 - 40794257
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    ||||||||||| |||||||||| |||||||| |  |||| ||| ||   |||||||| ||||||||||||| |||||| ||||||| ||||||           
T  40794415 tatacggtagtgattttcaccttttggtgtatcatatatttacggctctttgtatttgtcttttaaaaaatttaaataaaacattgttcttttaaaaaaa 40794316  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattc 169  Q
       | ||||| ||||||| |   ||||||||||| || |||||||||||||||||||||    
T  40794315 aaaacgtttttattttattacgagcctcttttcacttacagagccgagcctccgaattc 40794257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 40389518 - 40389453
Alignment:
Q  119 ttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||||||||||| || | |||||||||| ||||||||||||||||||||||| || || |||||||    
T  40389518 ttgattttatcactgacatcttttcattcccagagccgagcctccgaattcttagggatgaccctg 40389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 606214 - 606258
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||    
T  606214 cttgtatttatcttttaaaaaatttaaatagaacattgttctttt 606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 26719033 - 26718953
Alignment:
Q  15 cggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||| |||||||||| |  ||||| |||||||||||  ||  |||||||||||||||||||| | |||||||||||||    
T  26719033 cggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacatt 26718953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 26988777 - 26988697
Alignment:
Q  15 cggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||| |||||||||| |  ||||| |||||||||||  ||  |||||||||||||||||||| | |||||||||||||    
T  26988777 cggtagtgattttcacctttgagtgtatcgcatatatacgacactttgtatttatcttttaaaaattttaaatagaacatt 26988697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 10407474 - 10407565
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||| |||||||| | | | |||||  ||||| |||  || ||||| ||||||||||||||||| |||||||||||||| ||||||    
T  10407474 atacggtagtaattttcacttttagatgtacaacatatgtacgacaccttgtgtttatcttttaaaaaatttaaatagaacattgttctttt 10407565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 22648824 - 22648734
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 101  Q
    ||||| ||||| ||| |||||| | | ||| || |||||||||  ||  |||||||||||||||||||||| |||||||||||||| ||||    
T  22648824 tatacagtagtgattgtcacctttggatgtgccacatatatacgacacattgtatttatcttttaaaaaatttaaatagaacattgttctt 22648734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 2412090 - 2412191
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||| ||||| |||||||| | | | || | |||||||||||  ||  |||||||||| ||||||||||| |||||||||||||| |||    
T  2412090 gttcctcatgtatacagtagtgattttcacatttggatgcatcgcatatatacgacactttgtatttattttttaaaaaatttaaatagaacattgttct 2412189  T
Q  101 tt 102  Q
    ||    
T  2412190 tt 2412191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 41911715 - 41911614
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| ||||||| |||| ||||| || | | |||||||||| |||||||  || ||||||||| ||||||||||||  ||| | |||||||| |||    
T  41911715 gttcctcatatatacgatagtgatttttacttttgggtgtaccgcttatatacgacaccttgtatttctcttttaaaaaaattaagttgaacattgttct 41911616  T
Q  101 tt 102  Q
    ||    
T  41911615 tt 41911614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 17344969 - 17345053
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    |||||||||| ||||| | || | ||||||||||||||| |   ||||||||||||||  | |||||||| ||||||||||||||    
T  17344969 atacggtagtaatttttatctttgggtgtaccgcatatacatgacatcttgtatttattatataaaaaatttaaatagaacattg 17345053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 23284011 - 23283943
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||||||||||| ||||||||||||||| | | | | ||||||| |||||||||| |||| |||||    
T  23284011 gttttgattttatcactggcctcttttcattcctaaaactgagcctctgaattctcagggacggccctg 23283943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 27530543 - 27530587
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||    
T  27530543 cttgtattaatcttttaaaaaatttaaatagaacattgttctttt 27530587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 28822320 - 28822253
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccct 183  Q
    ||||||||||||||| |  |||||||||||| ||| |||||| |||||||||||| || |||| ||||    
T  28822320 gttttgattttatcactaacctcttttcattcccaaagccgaacctccgaattcttagggacggccct 28822253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 188
Target Start/End: Complemental strand, 29143462 - 29143416
Alignment:
Q  142 tcatttccagagccgagcctccgaattctcagcgacgaccctgatta 188  Q
    ||||||||||||||||||||||||||||| |   |||||||||||||    
T  29143462 tcatttccagagccgagcctccgaattcttatgaacgaccctgatta 29143416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 31881416 - 31881346
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    ||||||||||||| | || || ||||||||| |||||||||||||||  |||| |||| |||| |||||||    
T  31881416 gttttgattttattactgaccacttttcattcccagagccgagcctctaaattttcagggacggccctgat 31881346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 22875003 - 22875039
Alignment:
Q  60 ttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  22875003 ttgtatttatcttttaaaaaatttaaatagaatattg 22875039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 35080806 - 35080766
Alignment:
Q  63 tatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||||||||||| |||||| ||||||| ||||||    
T  35080806 tatttatcttttaaaaaatttaaataaaacattgttctttt 35080766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 54619304 - 54619120
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  54619304 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 54619205  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||        ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  54619204 tttaaaaaaaattatgttttgattttatcattggcttcttttcatttccagagccgagcctccgaattctcagggacggccctga 54619120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 2 - 185
Target Start/End: Complemental strand, 38681193 - 38681010
Alignment:
Q  2 ttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 101  Q
    |||||||  |||||||||||||||||||||||| | ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  38681193 ttcctcatgtatacggtagtcattttcacctctggatgtaccgcatacatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctt 38681094  T
Q  102 ttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    ||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  38681093 ttaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctga 38681010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 4 - 184
Target Start/End: Complemental strand, 36716123 - 36715942
Alignment:
Q  4 cctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||| |||||||| ||| ||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36716123 cctcacgtatacggtggtcgttttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 36716024  T
Q  104 -nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
             ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  36716023 aaataaaaattatgtttttattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 36715942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 27078660 - 27078486
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnn 109  Q
    |||||||||||||||||||||||| ||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||           
T  27078660 tatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgcttttttaaaaaaa 27078561  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
      ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  27078560 aattatgttttgattttatcactgacctcttttcatttccagagccaagcctccgaattctcagggacggccctg 27078486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 27084457 - 27084283
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnn 109  Q
    |||||||||||||||||||||||| ||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||| ||||           
T  27084457 tatacggtagtcattttcacctctgggtataccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgcttttttaaaaaaa 27084358  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
      ||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  27084357 aattatgttttgattttatcactgacctcttttcatttccagagccaagcctccgaattctcagggacggccctg 27084283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 8073439 - 8073256
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||| | | ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||| ||||    
T  8073439 gttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattactct 8073340  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||         || ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  8073339 tttaaaaaaaa-tacgttttgattttatcactgacctcttttcatttccagagccgagcctccgaattctcagggacggccctga 8073256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 21582776 - 21582960
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| |||    
T  21582776 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaataaaacattgttct 21582875  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||          || ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |||| |||||    
T  21582876 tttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccaaagccgagcctccgaattctcagggacggccctg 21582960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 47467689 - 47467872
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  47467689 gttcctcatgtatacggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 47467788  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||           | ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  47467789 ttaaaaaaaaaacacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 47467872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 34290737 - 34290568
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| | |    
T  34290737 gttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 34290638  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         || ||||||||||||||| || | |||||||||| |||||||||||||||||||||||    
T  34290637 tttaaaaaaaaatacgttttgattttatcactgacttcttttcattcccagagccgagcctccgaattct 34290568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 42098806 - 42098990
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||||||||||  || |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  42098806 gttcctcatgtatacggtagtcattttcacctctgagtataccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 42098905  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||          |  |||||||||||||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||||    
T  42098906 tttaaaaaaaaagacattttgattttatcactggcctcttttcatttcccgagctgagccttcgaattctcagggacggccctga 42098990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 3953997 - 3953816
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||  |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||    
T  3953997 gttcctcatgtatacggttttcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttct 3953898  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccct 183  Q
    |||         ||  |||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||| ||||    
T  3953897 tttaaaaaaaa-tacattttaattttatcactggcctcttttcatttccagagcggaacctccgaattctcagggacggccct 3953816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 37168372 - 37168541
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | ||| |||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||| | |    
T  37168372 gttcctcatgtatacggtagtcattttcacctttgggtataccacatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 37168471  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         || ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  37168472 tttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattct 37168541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 43207338 - 43207157
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  43207338 gttcctcatgtatacggtagtcattttcacct-ttgatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctct 43207240  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||| | ||||||| ||||||||||||||| |||||||||||||||| |||||| || |||| |||||    
T  43207239 tttaaaaaaaa-tacgtttttaatttatcactggcctcttttcattcccagagccgagcctccaaattcttagggacggccctg 43207157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 44708482 - 44708650
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | ||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||| || |    
T  44708482 gttcctcatgtatacggtagtcattttcacctttgggtgtaccggatatatacggcaccttatatttatcttttaaaaaatataaatagaacatttct-t 44708580  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         || ||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||    
T  44708581 tttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagttgagcctccgaattct 44708650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 53149415 - 53149238
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| | ||||  ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  53149415 gttcctcatgtatacggtagtcatttttatctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 53149316  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||          | ||||||||||||||| ||| ||||||||||| || || | |||||||||||||||||| ||||    
T  53149315 tttaaaaaaaaaaacgttttgattttatcactggtctcttttcattccccgaactgagcctccgaattctcagagacg 53149238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 178
Target Start/End: Original strand, 36605980 - 36606146
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatc-ttttaaaaaatataaatagaacattgctcttttnnnnnn 109  Q
    ||||||||||| ||||||| |||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| ||          
T  36605980 tatacggtagt-attttcatctctgggtgtaccgcatatatacggcaccttgtatttatctttttaaaaaatataaatagaacattgctctattaaaaaa 36606078  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
       || ||||||||||||||| || ||||||||||||||||||||||| |||||||||| |||| ||||    
T  36606079 aa-tacgttttgattttatcactgacctcttttcatttccagagccgaacctccgaattttcagggacg 36606146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 53506975 - 53506815
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnn 109  Q
    |||||||||||||||||||||| | |||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||| | ||||           
T  53506975 tatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgtttttttaaaaaaa 53506876  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
       |||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||    
T  53506875 aaatatgttttgattttatcactggcctctcttcattcccagagccgagccttcgaattct 53506815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 18372485 - 18372658
Alignment:
Q  2 ttcctcacatatacggtagtcattttcacctcttggtgtaccgc----atatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgc 97  Q
    |||||||  ||||||||||||||||||||||||  |||||||||    ||||||||  || |||||||||||||||||||||||||||||||||||||||    
T  18372485 ttcctcatgtatacggtagtcattttcacctctgtgtgtaccgcgcgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgc 18372584  T
Q  98 tcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctca 172  Q
    ||||||         || ||||||||||||||| || |||||||||||| |||| | ||||||||||||||||||    
T  18372585 tcttttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagtgtcgagcctccgaattctca 18372658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 50939334 - 50939152
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||| | ||||||||  |||||||| ||| ||| |||||||||||||||||||||||||||| ||||||| |    
T  50939334 gttcctcatgtatacggtagtcatttttacctttgggtgtaccatatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgct-t 50939236  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||||| |||||||||||||||  |||||||||||| ||||||||| || |||| |||||    
T  50939235 tttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcccccgaattcttagggacggccctg 50939152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 54407249 - 54407073
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg---ctcttttnnnn 107  Q
    |||||||||||||||||||||| | | |||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||    | ||||        
T  54407249 tatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgttttttttttaaaa 54407150  T
Q  108 nnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
          | |||||||||||||||  |||||||||||||| ||||||||||||||||||||||| || |||| |||||    
T  54407149 aaaaaaacgttttgattttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 54407073  T

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Target: chr3; HSP #21
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 50258708 - 50258553
Alignment:
Q  18 tagtcattttcacc-tcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatg 116  Q
    |||||||||||||| ||  ||||||||||||||||||  || ||||||||||| |||||||||||||||||||||||| ||||||||         ||||    
T  50258708 tagtcattttcaccctccgggtgtaccgcatatatacgacaccttgtatttattttttaaaaaatataaatagaacatcgctctttttaaaaaaa-tatg 50258610  T
Q  117 ttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
    |||||||||||||| ||  |||||||| || ||||||||||||||||||||||||||    
T  50258609 ttttgattttatcactgatctcttttcgttcccagagccgagcctccgaattctcag 50258553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 9878778 - 9878686
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||| ||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  9878778 tatacgatagtcattttcacctttgggtgtaccgcatatatactgcaccttatatttatcttttaaaaaatataaatagaatattgctctttt 9878686  T

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Target: chr3; HSP #23
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 32319256 - 32319162
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    |||||||  ||||| | |||| |||||||||| | ||||||||||||||||||| ||  |||||||||||||||||||||| |||||||||||||    
T  32319256 gttcctcgtatataagatagtaattttcacctttgggtgtaccgcatatatacaacactttgtatttatcttttaaaaaatttaaatagaacatt 32319162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8420331 - 8420425
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    |||||||  |||||||| ||| |||||||| | | |||||||  ||||||||| ||| ||||||||||||||||||||||| |||||||||||||    
T  8420331 gttcctcgtatatacggcagtgattttcacatttgggtgtacaacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacatt 8420425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 29620426 - 29620364
Alignment:
Q  122 attttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||||| || |||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  29620426 attttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 29620364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 54574928 - 54574826
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| |||||| ||||| || | | |||||||||||||||||| | | ||||||||||| |||| |||||| |||||||||||||| |||    
T  54574928 gttcctcatgtatatggtagtgatttttacttttgggtgtaccgcatatatacggtaccttgtatttatattttgaaaaatttaaatagaacattgttct 54574829  T
Q  101 ttt 103  Q
    |||    
T  54574828 ttt 54574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 48157196 - 48157302
Alignment:
Q  63 tatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctc 162  Q
    |||||||||||||||||||||||||||| ||||||  ||||        |  |||||||||||||||| ||||||||||| ||| || || |||||||||    
T  48157196 tatttatcttttaaaaaatataaatagatcattgcattttttttaaaaatg-tgttttgattttatcactggcctctttttattcccggaaccgagcctc 48157294  T
Q  163 cgaattct 170  Q
    ||||||||    
T  48157295 cgaattct 48157302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 26279563 - 26279649
Alignment:
Q  17 gtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||| ||||||| || | ||||||  ||||||||||  || ||| ||||||||||||||||||| |||||||||||||| ||||||    
T  26279563 gtagtgattttcatctttgggtgtattgcatatatacgacaccttctatttatcttttaaaaaatttaaatagaacattgttctttt 26279649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29620489 - 29620423
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtattt 67  Q
    ||||||||  |||||||||||||||||||||||| | | |||||||||||||| ||| |||||||||    
T  29620489 gttcctcatgtatacggtagtcattttcacctctggatataccgcatatatacggcaccttgtattt 29620423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 23641382 - 23641329
Alignment:
Q  38 tgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaa 91  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||    
T  23641382 tgtaccgcatatatacgacacattgtatttatcttttaaaaaatataaatagaa 23641329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 28689452 - 28689368
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||| ||| |||||||||| | | | || ||||||||||| ||| ||||||||||||||||  ||||| |||||||||||||    
T  28689452 tatacggcagtgattttcacctttggatatatcgcatatatacggcaccttgtatttatctttttgaaaatttaaatagaacatt 28689368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 42453435 - 42453511
Alignment:
Q  27 tcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||| | |||||| ||||||||||   || ||||||||||||||||||||||| ||||| |||||||| ||||||    
T  42453435 tcacctttaggtgtatcgcatatatatgacaccttgtatttatcttttaaaaaatttaaattgaacattgttctttt 42453511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 48720497 - 48720429
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||||||||||| |  |||||||||||| |||||||||||||||| |||||| || |||| |||||    
T  48720497 gttttgattttatcacttacctcttttcattcccagagccgagcctcccaattcttagggacggccctg 48720429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 25855437 - 25855527
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||| ||||||| || | |||| ||  |||||||||  || |||||||| |||||||||||||| |||||||||||||| |||||    
T  25855437 tatacggtagtgattttcaactttgggtgcactacatatatacgacaccttgtatt-atcttttaaaaaatttaaatagaacattgttcttt 25855527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 49393105 - 49393195
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||| ||||| |||| | |||||||  |||||||||  |  ||||||||||||||||||||||| |||| ||||||||| |||||    
T  49393105 tatacggtagtaatttttacctttgggtgtaca-catatatacgacgccttgtatttatcttttaaaaaatttaaagagaacattgttcttt 49393195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 3048608 - 3048435
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    ||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||           
T  3048608 tatacggtagtcattttcatctctaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagtatattgctcttttaaaaaaa 3048509  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  3048508 attatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagagacggccctg 3048435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2952322 - 2952137
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  2952322 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcactttgtatttatcttttaaaaaatataaatagaacattgctct 2952223  T
Q  101 ttt--nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||          ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  2952222 ttttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacggccctg 2952137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 30883331 - 30883509
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||    
T  30883331 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatataaatagaacattgctct 30883430  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||         ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  30883431 tttaaaaaaaaattatgttttgattttatcactggcctcttttcatttccagagccgagcctctgaattctcagggacg 30883509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 13534787 - 13534612
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  13534787 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatataaatagaacattgctct 13534689  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||         || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  13534688 tttaaaaaaaa-tacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattttcagggacg 13534612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 13624327 - 13624152
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  13624327 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggca-cttgtatttatcttttaaaaaatataaatagaacattgctct 13624229  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||         || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  13624228 tttaaaaaaaa-tacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattttcagggacg 13624152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 45475819 - 45475990
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  45475819 gttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 45475918  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
    |||         || ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  45475919 tttaaaaaaaa-tacgttttgattttatcactggcctcttttcattccccgagccgagcctccgaattctcag 45475990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 37430259 - 37430076
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||||| |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  37430259 gttcctcatgtatacggtagtcatttttacctctaggtgtaacgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 37430160  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||          | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  37430159 tttaaaaaaaaaaacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 37430076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 5860835 - 5860671
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt--tnnnnn 108  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||            
T  5860835 tatatggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctctttaaaaataa 5860736  T
Q  109 nnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
       ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||    
T  5860735 atattatgttttgattttatcattgacctcttttcatttccagagccgagcctccaaattctcag 5860671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 23606730 - 23606544
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  23606730 gttcctcatgtatacggtagtcatttttacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctct 23606631  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgatta 188  Q
    |||         || ||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| || |||| |||||||||    
T  23606630 tttaaaaaaaa-tacgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagggacggccctgatta 23606544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 23798362 - 23798178
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||| | | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  23798362 gttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctct 23798263  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    ||          || ||||||||||||||| || ||||||||| || ||||||||||||||||||||||| || |||| ||||||    
T  23798262 ttaaaaaaaatatacgttttgattttatcattgacctcttttcgttcccagagccgagcctccgaattcttagggacggccctga 23798178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 42600784 - 42600967
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||| ||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||| |    
T  42600784 gttcctcatgtatacggtagtcattttcacctttgggtgtaccacatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgcttt 42600883  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||          | ||||||||||||||| || ||||||||||||| |||||||||||||||||||||| || |||| |||||    
T  42600884 tttaaaaaaaaaaacgttttgattttatcactgacctcttttcattttcagagccgagcctccgaattcttagggacggccctg 42600967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 10917393 - 10917561
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| ||||||||||||||||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||| | |    
T  10917393 gttcctcatgtataaggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg-ttt 10917491  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         || ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  10917492 tttttaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattct 10917561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 41879197 - 41879364
Alignment:
Q  15 cggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnntta 114  Q
    |||||||||||||||||| | | |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||||||         ||    
T  41879197 cggtagtcattttcacctttggatgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgttcttttaaaaaaa--ta 41879294  T
Q  115 tgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
     ||||| ||||||||| |  |||||||||||| |||||||||||||| ||||||||||| |||| |||||    
T  41879295 cgttttaattttatcactaacctcttttcattcccagagccgagccttcgaattctcagggacggccctg 41879364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 8102914 - 8103008
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  ||||||||| | |||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||||    
T  8102914 gttcctcatgtatacggtaatgattttcacctttaggtgtaccgcatatatactgcaccttgtatttatcttttaaaaaatttaaatataacatt 8103008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 7944623 - 7944521
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||||||||| | |||||||  ||||||||| ||| ||||||||||| ||||||||||| |||||| ||||||| |||    
T  7944623 gttcctcatgtatacggtagtgattttcacctttgggtgtacaacatatatacggcaccttgtatttattttttaaaaaatttaaataaaacattgttct 7944524  T
Q  101 ttt 103  Q
    |||    
T  7944523 ttt 7944521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 41677275 - 41677106
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaa-aaaatataaatagaacattgctc 99  Q
    ||||||||  ||||| ||||| |||||||||| | | |||| |||||||||||  ||||||||||||||||||||| ||||| |||||||||||||| ||    
T  41677275 gttcctcatgtatacagtagtgattttcacctttagatgtatcgcatatatacgacatcttgtatttatcttttaaaaaaatttaaatagaacattgttc 41677176  T
Q  100 ttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattc 169  Q
    ||||         || ||||| ||||||| |  || ||||||||| |  |||||||||||||||||||||    
T  41677175 ttttaaaaaaaaatacgtttttattttattataggtctcttttcactcacagagccgagcctccgaattc 41677106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5942698 - 5942777
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaa 80  Q
    ||||||||  ||||||||||| |||||||||| | ||||||||||| ||||||  |||||||||||||||||||||||||    
T  5942698 gttcctcatgtatacggtagtgattttcacctttgggtgtaccgcacatatacgacatcttgtatttatcttttaaaaaa 5942777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 15167516 - 15167414
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||| |||| |||||||| | | |||||| |||||||||||| ||  || ||||||||||||||||||| |||||||||||||| |||    
T  15167516 gttcctcatgtatacgatagtgattttcacatttgggtgtatcgcatatatacaacactttatatttatcttttaaaaaatttaaatagaacattgttct 15167417  T
Q  101 ttt 103  Q
    |||    
T  15167416 ttt 15167414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 5973198 - 5973106
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||| | ||||||| || | |||||||  |||||||||  || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  5973198 tatacggtaatgattttcatctatgggtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 5973106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 11290196 - 11290288
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| |||||||||| |  ||||||  |||||||||  || ||||||||||||||||||||||| |||||| ||||||| ||||||    
T  11290196 tatacggtagtgattttcacctttgagtgtacaacatatatacgacaccttgtatttatcttttaaaaaatttaaataaaacattgttctttt 11290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 20003796 - 20003728
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||||| ||||||||| |||| |||||    
T  20003796 gttttgattttatcactggcctcttttcattccccgagccgagcctccaaattctcagggacggccctg 20003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 34789953 - 34789861
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| |||||||||| | |||||||  |||||||||  ||||||||||||||||||||| | || |||||||||||| | ||||||    
T  34789953 tatacggtagtgattttcacctttgggtgtacaacatatatacgacatcttgtatttatcttttaagagatttaaatagaacatcgttctttt 34789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 15078760 - 15078854
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  |||||| |||| |||||||| | | ||||||  |||||||||||||| ||| ||||||||||||||||| | |||||||||||||    
T  15078760 gttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatt 15078854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5721561 - 5721654
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacat 94  Q
    ||||||||  ||||||||||| |||||||| | | |||||||||  ||||||  ||| ||||||||||||||||||||||  ||||||||||||    
T  5721561 gttcctcaggtatacggtagtgattttcacttttgggtgtaccgattatatagggcaccttgtatttatcttttaaaaaaattaaatagaacat 5721654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 39332506 - 39332405
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||||||||| | | |||||||| ||||||   || |||||||||||||||| |||||  |||||||||||||| |||    
T  39332506 gttcctcatgtatacggtagtgattttcacctttggatgtaccgcttatatatgacaccttgtatttatctttttaaaaaattaaatagaacattgttct 39332407  T
Q  101 tt 102  Q
    ||    
T  39332406 tt 39332405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 8646265 - 8646309
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||    
T  8646265 cttgtatttatcttttaaaaaatttaaatagaacattgttctttt 8646309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 9108553 - 9108596
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  9108553 cttgtatttatcttttaaaaaatttaaatagaacattgttcttt 9108596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 30674482 - 30674403
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    |||||||||| |  ||||| |||||||||||  || ||| |||||||||||||||| || |||||||||||||| |||||    
T  30674482 attttcacctttgagtgtatcgcatatatacgacaccttatatttatcttttaaaacatttaaatagaacattgttcttt 30674403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 34868220 - 34868184
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||||||||||||||||| |||||||||||||    
T  34868220 cttgtatttatcttttaaaaaatttaaatagaacatt 34868184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 25561594 - 25561502
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  ||||||| ||| |||||||| | | ||| || ||||||||||| ||| |||||||||||| ||||||| || |||||||||||||    
T  25561594 gttcctcatgtatacggcagtgattttcacatttgggt-tatcgcatatatacggcaccttgtatttatc-tttaaaagatttaaatagaacatt 25561502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 23941134 - 23941097
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  23941134 cttgtatttatcttttaaaaaatttaaataaaacattg 23941097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 38009191 - 38009151
Alignment:
Q  63 tatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||||||||| | |||||||||||||| ||||||    
T  38009191 tatttatcttttaaaaattttaaatagaacattgttctttt 38009151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 18776856 - 18776683
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||           
T  18776856 tatacggtagtcattttcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 18776757  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
     |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  18776756 attatattttgattttatcactgacctcttttcatttccagagccgagcctccgaattctcagggacggccctg 18776683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 29077222 - 29077404
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  29077222 gttcctcatgtatacggtagtcattttcacctcttggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 29077321  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  29077322 tttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 29077404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 8171639 - 8171463
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  8171639 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 8171540  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||         || | ||||||||||||| || |||||||||||| |||||||||||||||||||||||||| ||||    
T  8171539 tttaaaaaaaa-tacgctttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacg 8171463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 12596376 - 12596207
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnn 111  Q
    ||||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||| |||||||             
T  12596376 atacggtagtcattttcacctctgggtgtaccacatatatacggcaccttgtatttatctttaaaaaaatataaatagaacatcgctctttaaaaaaaa- 12596278  T
Q  112 ttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
      | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  12596277 --acgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 12596207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 26254015 - 26254167
Alignment:
Q  21 tcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgtttt 120  Q
    ||||||||| || | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  26254015 tcattttcatctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaaaatatgtttt 26254114  T
Q  121 gattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
    |||||||||| || |||||||||||| ||| ||||||||||||||||||||||    
T  26254115 gattttatcactgacctcttttcattcccaaagccgagcctccgaattctcag 26254167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 23551171 - 23550984
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaa-tataaatagaacattgctc 99  Q
    ||||||||  |||||||||||||||||||||| | | ||||||||||||||||  || ||| |||||||||||||||||| |||||||||| |||||||     
T  23551171 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacgacaccttatatttatcttttaaaaaaatataaatagatcattgctt 23551072  T
Q  100 ttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgatta 188  Q
    ||||        | ||||||||||||||||| |||||||||||||||  |||||||||||||||||||||| || ||||||||||||||    
T  23551071 tttttaaaaaaat-atgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacgaccctgatta 23550984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 10329500 - 10329341
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||||||||||||||||||| | ||| | || ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| ||||           
T  10329500 tatacggtagtcattttcacctttgggttttcctcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgcttttttttaaaaa 10329401  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
      || ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  10329400 aatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattct 10329341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 19692096 - 19692291
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||  |||||||||||||| | |||||||||||||||||  ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  19692096 gttcctcatgtatacgaaagtcattttcacctttaggtgtaccgcatatatatggcaccttatatttatcttttaaaaaatataaatagaacattgctct 19692195  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgattaaattatat 196  Q
    |||         || ||||||||||||||| ||| | |||||||||||||||||||||| |||||||||| || || | ||||| ||| |||||||    
T  19692196 tttaaaaaaaaatacgttttgattttatcactggacacttttcatttccagagccgagcttccgaattcttagggagggccctggttatattatat 19692291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 20091381 - 20091197
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg-ctc 99  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| |||||  |     
T  20091381 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattgtttt 20091282  T
Q  100 ttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||         || ||||||||||||||| |||||||||||||||  |||||||||||||||||||||| || |||| |||||    
T  20091281 ttttaaaaaaaaatacgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattcttagggacggccctg 20091197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 28749722 - 28749895
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnn 109  Q
    ||||||||||| |||||||| |||  ||||||||||||||||| ||| |||||||||||||||| |||||||||||||||| |||||||||||           
T  28749722 tatacggtagt-attttcacatctgagtgtaccgcatatatacggcaccttgtatttatcttttcaaaaatataaatagaatattgctcttttgaaaaaa 28749820  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
       |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||| |||| |||||    
T  28749821 aaatatgttttgattttatcattggtctcttttcattcccagagccgagcctccgaattttcagggacggccctg 28749895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 38414976 - 38414793
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||| |||||||||||||||| | |||||||| |||||||||  || ||| |||||||||||||||||||| ||||||||| |||||||    
T  38414976 gttcctcatgtatacagtagtcattttcacctttgggtgtaccacatatatacgtcaccttatatttatcttttaaaaaatacaaatagaacgttgctct 38414877  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||| | | | |||||||||||||||||| |||||||||||||||| || ||||||||||    
T  38414876 tttgcaaaaaaatacgttttgattttatgactagtctcttttcatttccagagtcgagcctccgaattcttagggacgaccctg 38414793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 8239689 - 8239857
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| |||||||||| |||||||||| | | |||||||| ||||||||| |||  || ||||||| ||||||||||||||||||||||||| ||||    
T  8239689 gttcctcatatatacggtaatcattttcacatttgggtgtaccacatatatacggcacattatatttattttttaaaaaatataaatagaacattactct 8239788  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         || ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8239789 tttaaaaaaaa-tacgttttcattttatcattggcctcttttcatttccagagccgagcctccaaattct 8239857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 10955486 - 10955588
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||||||||||  ||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||    
T  10955486 gttcctcatgtatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacatcgctct 10955585  T
Q  101 ttt 103  Q
    |||    
T  10955586 ttt 10955588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 24525785 - 24525599
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||| | | ||||||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||| | |    
T  24525785 gttcctcatgtatacggtagtcattttcacttttgggtgtaccgcatatacacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 24525686  T
Q  101 t---ttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |              || |||||||||||||||  |||||||||||||| ||||||||||||||||||||||| || ||||||||||    
T  24525685 taaaaaaaaaaaaaatacgttttgattttatcacaggcctcttttcattcccagagccgagcctccgaattcttagggacgaccctg 24525599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 48983944 - 48983756
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||||||||| | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||| ||||| | |    
T  48983944 gttcctcatgtatacggtagttattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagatcattgtttt 48983845  T
Q  101 ttt-----nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||              || ||||||||||||||| |||||||||||||||  |||||||||||||||||||||| || |||| |||||    
T  48983844 ttttaaaaaaaaaaaaatacgttttgattttatcattggcctcttttcattctcagagccgagcctccgaattcttagggacggccctg 48983756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 47985070 - 47984885
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaa-aaaatataaatagaacattgctc 99  Q
    ||||||||  |||||||| ||||||||||||| | |||||||||||||||||| ||| ||| ||||| |||||||| ||||||||||||||||||||||     
T  47985070 gttcctcatgtatacggtggtcattttcacctttgggtgtaccgcatatatacggcaccttatatttttcttttaaaaaaatataaatagaacattgctt 47984971  T
Q  100 tttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||           | ||||||||||||||| |||| |||||||||| |||||||||||||  |||||||| || |||| |||||    
T  47984970 ttttaaaaaaaaaacacgttttgattttatcactggcatcttttcattcccagagccgagccaacgaattcttagggacggccctg 47984885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 33162418 - 33162338
Alignment:
Q  22 cattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||| | |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  33162418 cattttcacctttaggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagagcattgctcttt 33162338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 25010543 - 25010611
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||| |||||    
T  25010543 gttttgattttatcactggcctcttttcatttccagagccgagcctccgaattcttagggacggccctg 25010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 9021890 - 9021799
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||| |||||||||| | |||||||||||||||||| |||  |||||||||||||||||||||| ||||||| | |||| |||||    
T  9021890 tatacggtagtgattttcacctttgggtgtaccgcatatatacggcacattgtatttatcttttaaaaaatttaaatagcaaattgttcttt 9021799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 6765772 - 6765680
Alignment:
Q  10 atatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    |||||||||||| |||||||||| | | ||||| || |||||||  || ||||||||||||||||||||||| |||||||||||||| |||||    
T  6765772 atatacggtagtgattttcacctttggatgtacggcttatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttcttt 6765680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 23744808 - 23744900
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| ||||| | || | |||||||||||||||| | ||| ||||||||||||||||||||||| ||| |||||||||| ||||||    
T  23744808 tatacggtagtgatttttatctttaggtgtaccgcatatatgcggcaccttgtatttatcttttaaaaaatttaattagaacattgttctttt 23744900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 2611326 - 2611260
Alignment:
Q  37 gtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||||||||||  || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  2611326 gtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 2611260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7398453 - 7398555
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| |||||| |||||||||| | |||||| | ||||||||  ||| ||||||||||||||| ||||||| |||||||||||||| |||    
T  7398453 gttcctcatgtatatggtagtgattttcacctttaggtgtatcacatatatatggcaccttgtatttatctttcaaaaaatttaaatagaacattgttct 7398552  T
Q  101 ttt 103  Q
    |||    
T  7398553 ttt 7398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 36891580 - 36891674
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  ||||||||||| |||||||||| | | ||||||| ||||||||| ||  ||||||| ||| ||||||||||||||||||||||||    
T  36891580 gttcctcatgtatacggtagtgattttcacctttggatgtaccgaatatatacaacacattgtattcatcatttaaaaaatataaatagaacatt 36891674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 40357365 - 40357300
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgacc 181  Q
    ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||  |||||||    
T  40357365 gttttgattttatcactgaccttttttcatttccagagccgagcctccgaattctcaaggacgacc 40357300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 23859085 - 23859169
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||||| ||||||| || | |||||| ||||||||||| | |  |||||||||||||||||||||| |||||||||||||    
T  23859085 tatacggtagtaattttcatctttgggtgtatcgcatatatacggtacattgtatttatcttttaaaaaatttaaatagaacatt 23859169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 12981328 - 12981422
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    |||||||| |||||| ||||| |||||||||| |  ||||||||| ||||||  | | ||||||||||||||||||||||  |||||||||||||    
T  12981328 gttcctcatatatacagtagtgattttcacctttgtgtgtaccgcgtatatatggaaccttgtatttatcttttaaaaaaattaaatagaacatt 12981422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 27237479 - 27237421
Alignment:
Q  45 catatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  27237479 catatatacaacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 27237421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 101
Target Start/End: Complemental strand, 36903002 - 36902924
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 101  Q
    |||||||||| | |||||||  |||||||||  |||||||||||||||| ||||||||| |||||||||||||| ||||    
T  36903002 attttcacctttaggtgtacaacatatatacgacatcttgtatttatctattaaaaaatttaaatagaacattgttctt 36902924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 21763672 - 21763586
Alignment:
Q  16 ggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    |||||| |||||||| | |||||||| |||||||||||   |  |||||||||||||||||||||| ||||||||||| || |||||    
T  21763672 ggtagtgattttcactttttggtgtatcgcatatatacgatactttgtatttatcttttaaaaaatttaaatagaacaatgttcttt 21763586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 18201161 - 18201234
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    |||||||||  | |||||||| ||||||||  ||||||||||||||| ||||||||||| |||||||| |||||    
T  18201161 attttcacccttaggtgtaccacatatatatggcatcttgtatttatattttaaaaaatttaaatagatcattg 18201234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 20153213 - 20153297
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||| ||| ||||||| || | ||| || |||||||||||| ||  |||||||||||||||||||||| |||||| ||||||    
T  20153213 tatacggcagtgattttcatctttgggtttatcgcatatatacaacactttgtatttatcttttaaaaaatttaaataaaacatt 20153297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 12419536 - 12419493
Alignment:
Q  60 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  12419536 ttgtatttatcttttaaaaaatttaaatagaacattgttctttt 12419493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 40357453 - 40357414
Alignment:
Q  14 acggtagtcattttcacctcttggtgtaccgcatatatac 53  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  40357453 acggtagtcattttcatctcttggtgtaccgcatatatac 40357414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 9014233 - 9014177
Alignment:
Q  46 atatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||| ||  |||||||||||||||||||||| |||||| ||||||| |||||    
T  9014233 atatatacaacacattgtatttatcttttaaaaaatttaaataaaacattgttcttt 9014177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25010435 - 25010479
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgc 45  Q
    ||||||||  |||||||||||||||||||||| | ||||||||||    
T  25010435 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgc 25010479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 38209691 - 38209520
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  38209691 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 38209592  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctca 172  Q
    ||         |||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  38209591 ttaaaaaaaaattatattttgattttatcactggcctcttttcatttccagagccgagcctccaaattctca 38209520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 34768674 - 34768492
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||| |||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  34768674 gttcctcatgtatacggtaatcattttcacctctgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctct 34768575  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         |||||||||||||||||| | ||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  34768574 tttaaaaaaaa-tatgttttgattttatcactagcctcttttcattcccaaagccgagcctccgaattctcagggacgaccctg 34768492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 47128994 - 47129170
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||    
T  47128994 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgttct 47129093  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||         ||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  47129094 tttaaaaaaaa-tacattttgattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 47129170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 54780784 - 54780968
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  54780784 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 54780883  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||          || ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||| |||||    
T  54780884 tttaaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccaagcctccgaattctcagggacggccctg 54780968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 32915392 - 32915575
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||| ||||||| |||||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  32915392 gttcctcatgtatacggtaatcatttttacctctgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 32915491  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||            ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  32915492 tttaaaaaaaaaaccgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 32915575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 43455631 - 43455463
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  43455631 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctct 43455532  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         || ||||||||||||||| || |||||||||||| |||||| ||||||||||||||||    
T  43455531 tttaaaaataa-tacgttttgattttatcactgacctcttttcattcccagagtcgagcctccgaattct 43455463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 2790841 - 2790659
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| | | ||| |||||||||||||||||||||||||||||||||| |||    
T  2790841 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagaacattgttct 2790742  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||          ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| || |||| |||||    
T  2790741 tttaaaaaaaa-aatgttttgattttatcactggtctcttttcattcccagagccgagcctccgaattcttagagacggccctg 2790659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 34027586 - 34027768
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||| |||||||||||||||| | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||| |    
T  34027586 gttcctcatgtataccgtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgct-t 34027684  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || |||| |||||    
T  34027685 tttttaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 34027768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 37777323 - 37777156
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| || |    
T  37777323 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattacttt 37777224  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaatt 168  Q
    |||         || ||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  37777223 ttttttaaaaaatacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaatt 37777156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 32128601 - 32128774
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||||||||||||||||||||| | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||           
T  32128601 tatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 32128700  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
      || ||||||||||||||| || ||| |||||||| |||||||||||||||| |||||| || |||| |||||    
T  32128701 aatacgttttgattttatcactgaccttttttcattcccagagccgagcctccaaattcttagggacggccctg 32128774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 17679432 - 17679589
Alignment:
Q  26 ttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattt 125  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||         || ||||||||||    
T  17679432 ttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaatattgctcttttaaaaaaaa-tacgttttgattt 17679530  T
Q  126 tatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||| ||| ||||||||||| ||||| |||||||||||||||||||| |||| |||||    
T  17679531 tatcactggtctcttttcattcccagaaccgagcctccgaattctcagagacggccctg 17679589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 55255322 - 55255447
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgag 158  Q
    ||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  55255322 cttgtatttatcttttaaaaaatataaatggaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgag 55255421  T
Q  159 cctccgaattctcagcgacgaccctg 184  Q
    ||||||||||||||| |||| |||||    
T  55255422 cctccgaattctcagggacggccctg 55255447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 10978907 - 10979092
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||| ||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  10978907 gttcctcatgtatacggtagtcattttcacttctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 10979006  T
Q  101 ttt--nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||           || ||||||||||||||| |  |||||||||||| |||||||  | ||||||||||||||| |||| |||||    
T  10979007 tttaaaaaaaaaaatacgttttgattttatcactaacctcttttcattcccagagctaaacctccgaattctcagagacggccctg 10979092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 1105549 - 1105709
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    |||| ||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||  |||||||           
T  1105549 tatatggtagtcattttcacctctaggtgtaccgcatatatacgataccttgtatttatcttttaaaaaatataaatagaacatcactcttttaaaaaaa 1105648  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctca 172  Q
      || ||||||||||||||| || |||||||||||| ||||||||||||||| |||||||||    
T  1105649 a-tacgttttgattttatcactgacctcttttcattcccagagccgagcctctgaattctca 1105709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 5128942 - 5128758
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||| || |||||||||| ||| ||||||||||||||||||||||||||||||||| || |||||    
T  5128942 gttcctcatgtatacggtagtcattttcacctctgggtgcactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaatatcgctct 5128843  T
Q  101 tttnnnnnnnnttatgtttt-gattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    | |          | ||||| |||||||||| ||||||||||||||| |||||||||||||||  ||||||||| |||| |||||    
T  5128842 tctaaaaaaaaaaacgttttagattttatcactggcctcttttcattcccagagccgagcctctaaattctcagggacggccctg 5128758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 48209257 - 48209436
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnn 109  Q
    |||||||||||||| ||||| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||           
T  48209257 tatacggtagtcatattcacatctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaaa 48209356  T
Q  110 nnttatgttttgat-----tttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
       || ||||||||     ||||||| ||| ||||||||| | |||||||||||||||||||||||||| |||| |||||    
T  48209357 aaatacgttttgattttaatttatcactggtctcttttcactcccagagccgagcctccgaattctcagggacggccctg 48209436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 19498511 - 19498692
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||| |||||||||||||||| | | |||||||||||||  | ||| ||| ||||||||||||||||||||||||||||||||||||||    
T  19498511 gttcctcatgtatacagtagtcattttcacctttggctgtaccgcatata--cggcaccttatatttatcttttaaaaaatataaatagaacattgctct 19498608  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||         || ||||||||||||||| |||||| |||||||| | ||||||||||||||||||||| || |||| ||||||    
T  19498609 tttaaacaaaa-tacgttttgattttatcattggcctgttttcattcctagagccgagcctccgaattcttagtgacggccctga 19498692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 10428273 - 10428129
Alignment:
Q  25 tttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgatt 124  Q
    |||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||         ||  ||||||||    
T  10428273 tttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattg--ctttttaaaaaaaataaattttgatt 10428176  T
Q  125 ttatcagtggcctcttttcatttccagagccgagcctccgaattctc 171  Q
    ||| || || |||||||||||| ||||||||||||||||||||||||    
T  10428175 ttagcactgacctcttttcattcccagagccgagcctccgaattctc 10428129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 37514676 - 37514848
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    ||||||||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||            
T  37514676 tatacggtagtcattttcacctctgagtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctctttaaaaaaaa 37514775  T
Q  111 nt-tatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
       || ||||||||||||||| ||||||||||||||| ||   || |||||||| ||||||||| |||| |||||    
T  37514776 aaatacgttttgattttatcactggcctcttttcattccc--cgctgagcctccaaattctcagggacggccctg 37514848  T

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Target: chr4; HSP #20
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 16845028 - 16845210
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatctttt-aaaaaatataaatagaacattgctc 99  Q
    ||||||||  |||||||||||||||||||||  | |||||||  |||||||||  || ||| |||||||||||| |||||||||||||||||||||||||    
T  16845028 gttcctcatgtatacggtagtcattttcaccgttgggtgtactacatatatacgacaccttatatttatcttttaaaaaaatataaatagaacattgctc 16845127  T
Q  100 ttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||         || ||||||||||||||| ||| || |||||||||||||||||||||||||||||||| || |||| |||||    
T  16845128 ttttaaaaaaaa-tacgttttgattttatcactgg-cttttttcatttccagagccgagcctccgaattcttagggacggccctg 16845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 12 - 184
Target Start/End: Complemental strand, 16882484 - 16882313
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnn 111  Q
    ||||||||||||||||||||| ||||||||||| ||||| || ||| ||| ||||||||||||||||| |||||||||||||||| | ||||            
T  16882484 atacggtagtcattttcaccttttggtgtaccgtatatacacggcaccttatatttatcttttaaaaagtataaatagaacattg-ttttttttaaaaaa 16882386  T
Q  112 ttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
     || ||||||||||||||| || | |||||||||| | ||||||||||||||||||||| || |||| |||||    
T  16882385 atacgttttgattttatcactgacttcttttcattcctagagccgagcctccgaattcttagggacggccctg 16882313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 2 - 186
Target Start/End: Original strand, 35465115 - 35465297
Alignment:
Q  2 ttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 101  Q
    |||||||  ||||||||||| |||||||| | | |||||||||||||||||| ||| ||| |||||||||| ||||||||||||||| ||||||| ||||    
T  35465115 ttcctcatgtatacggtagttattttcacttttaggtgtaccgcatatatac-gcaccttttatttatcttgtaaaaaatataaatataacattgttctt 35465213  T
Q  102 ttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    ||         |||||||||||||||||| || |||||||||||| |||||  |||||||||||||||||||  | |||||||||    
T  35465214 ttaaaaaaaa-tatgttttgattttatcactgacctcttttcattcccagaatcgagcctccgaattctcagaaaggaccctgat 35465297  T

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Target: chr4; HSP #23
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 51964736 - 51964884
Alignment:
Q  22 cattttcacctcttggtgtaccgcatatatacagcatcttgtatttatctttt---aaaaaatataaatagaacattgctcttttnnnnnnnnttatgtt 118  Q
    ||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||   |||||||||||||||||||||||||||||         || |||    
T  51964736 cattttcacctctgggtgtatcgcatatatacggcaccttgtatttatctttttaaaaaaaatataaatagaacattgctcttttaaaaaaaa-tacgtt 51964834  T
Q  119 ttgattttatcagtggcctcttttcatttccagagccgagcctccgaatt 168  Q
    ||||||||||||  |||||||||||||| ||||||||||| |||||||||    
T  51964835 ttgattttatcatcggcctcttttcattcccagagccgagtctccgaatt 51964884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 54083342 - 54083176
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| | || | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||| | |    
T  54083342 gttcctcatgtatacggtagtcatttttatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagatcattg-ttt 54083244  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaatt 168  Q
    |||         || ||||||||||||||| || ||||||||||||  ||||||||||||||||||||    
T  54083243 tttttaaaaaaatacgttttgattttatcactgacctcttttcattctcagagccgagcctccgaatt 54083176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 35779425 - 35779257
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||| |||||||||||| | ||||||||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||    
T  35779425 gttcctcatgtatacggtaatcattttcacctttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatat-aatagaacattgctct 35779327  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctca 172  Q
    ||          || ||||||||||||||| | ||||||||||||| |  ||| ||| ||||||||||||||    
T  35779326 tt--aaaaaaaatacgttttgattttatcactagcctcttttcattcctcgagtcgaacctccgaattctca 35779257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 13460224 - 13460306
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaaca 93  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  13460224 tatacggtagtcattttcacatctgggtataccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaaca 13460306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 51691982 - 51691913
Alignment:
Q  34 ttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  51691982 ttggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgctctttt 51691913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 40089523 - 40089714
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaa---------aaatataaatagaa 91  Q
    ||||||||  |||||||||||||||||||||| | | |||||||||||||||| ||| ||| |||||||||||||||         ||||||||||| ||    
T  40089523 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaatataaataaatataaataaaa 40089622  T
Q  92 cattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||| ||||         || ||||||||||||||| || | |||||||||| | ||||||||||||||||||||| || ||||||||||    
T  40089623 cattgct-tttttaaaaaaaatacgttttgattttatcactgacttcttttcattccaagagccgagcctccgaattcttagggacgaccctg 40089714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 16922409 - 16922245
Alignment:
Q  21 tcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnnnnttatgttt 119  Q
    |||||||||||| | ||  ||| ||||||||||  ||  || |||||||||||||||||||||||||||||||||||||||||           | ||||    
T  16922409 tcattttcacctttggggatactgcatatatacgacactttatatttatcttttaaaaaatataaatagaacattgctcttttaaaaataaaaaacgttt 16922310  T
Q  120 tgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||||||||||| ||| ||||||||||| ||| || ||||||||| ||||||||| |||| |||||    
T  16922309 tgattttatcactggtctcttttcattcccaaagtcgagcctccaaattctcagggacggccctg 16922245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 23508553 - 23508418
Alignment:
Q  59 cttgtatttatcttttaaaaaat-ataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccga 157  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||          ||  |||||||||||||| ||||||||||||||| ||| ||||||    
T  23508553 cttgtatttatcttttaaaaaattataaatagaacattgctcattaaaaaaaaaatacattttgattttatcactggcctcttttcattcccaaagccga 23508454  T
Q  158 gcctccgaattctcagcgacgaccctgattaaatta 193  Q
    ||||||||||| |||  ||||  |||||||| ||||    
T  23508453 gcctccgaattttcatggacggtcctgattagatta 23508418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 27112037 - 27112132
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    ||||||||  ||||||||||| |||||||| | |||||||| ||||||||||   || ||||||||||||||||||||||| ||||| ||||||||    
T  27112037 gttcctcatgtatacggtagtgattttcacattttggtgtatcgcatatatatgtcaccttgtatttatcttttaaaaaatttaaattgaacattg 27112132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 52468304 - 52468395
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||| |||||||||| | | ||||   ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  52468304 atacggtagtgattttcacctttggatgtataacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 52468395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 9578728 - 9578662
Alignment:
Q  38 tgtaccgcatatatacagc-atcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||||||||  || | |||||||||||||||||||||||||||||||||||||||||||||    
T  9578728 tgtaccgcatatatatggctaccttgtatttatcttttaaaaaatataaatagaacattgctctttt 9578662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4167991 - 4167910
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaata 82  Q
    ||||||||  |||| |||||| |||||||||| | |||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  4167991 gttcctcatgtataaggtagtgattttcacctttgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaata 4167910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 39655332 - 39655252
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||| | |||||||||||||||| | | |  |||||||||||||||||||||| |||||||||||||| ||||||    
T  39655332 attttcacctttgggtgtaccgcatatatgcggaactttgtatttatcttttaaaaaatttaaatagaacattgttctttt 39655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 38352303 - 38352197
Alignment:
Q  63 tatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctc 162  Q
    |||||||||||||||||||||||||||| |||| || ||||         || ||||||||||||||| ||  ||||||||||| |||||||||||||||    
T  38352303 tatttatcttttaaaaaatataaatagatcattact-ttttaaaaaaaaatacgttttgattttatcactgatctcttttcattcccagagccgagcctc 38352205  T
Q  163 cgaattct 170  Q
    ||||||||    
T  38352204 cgaattct 38352197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 36118548 - 36118463
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    ||||||||||| |||||||  | | |||||| | |||||||||  || ||||||||||||||||||||||| ||||||||||||||    
T  36118548 tatacggtagtgattttcatatttgggtgtatcacatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 36118463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 36178689 - 36178774
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    |||| |||||| |||||||| | | |||||| |||||||||||  || ||||||||||||||||||| ||| ||||||||||||||    
T  36178689 tataaggtagtgattttcacatttgggtgtatcgcatatatacgacaccttgtatttatcttttaaataatttaaatagaacattg 36178774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 10042090 - 10041998
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| |||||||| | | |||||| | |||| |||| ||| ||||||||||| |||| |||||| |||||||||||||| ||||||    
T  10042090 tatacggtagtgattttcacatttaggtgtatcacatacatacggcaccttgtatttatttttttaaaaatttaaatagaacattgttctttt 10041998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 39329470 - 39329390
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||| || | |||||| | |||||||||| || ||||||||||||||||||||||| |||| ||||||||| ||||||    
T  39329470 attttcatctttgggtgtatcacatatatacaacaccttgtatttatcttttaaaaaatttaaagagaacattgttctttt 39329390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2135421 - 2135326
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    |||||||| ||||||| |||| || || |||| | | |||| |||||||||||  || ||||||||||||||||||||||| ||||||||| ||||    
T  2135421 gttcctcatatatacgatagtgatgtttacctttggatgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattg 2135326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24396941 - 24397043
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||| |||| |||||||||| |  ||||| | ||||||||| ||| ||| ||||||||||||||||||| |||||| || |||| |||    
T  24396941 gttcctcatgtatacgatagtgattttcacctttgagtgtatcacatatatactgcaccttatatttatcttttaaaaaatttaaataaaatattgttct 24397040  T
Q  101 ttt 103  Q
    |||    
T  24397041 ttt 24397043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 24969718 - 24969787
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||||| |||||||| | ||||||||||||| |||||| |||||||||||||||| || |||| ||||||    
T  24969718 gttttgtttttatcactagcctcttttcattcccagagtcgagcctccgaattcttagggacggccctga 24969787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 23509886 - 23509846
Alignment:
Q  13 tacggtagtcattttcacctcttggtgtaccgcatatatac 53  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  23509886 tacggtagtcattttcacctctaggtgtaccgcatatatac 23509846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 2975413 - 2975358
Alignment:
Q  113 tatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaatt 168  Q
    |||||||||||||||||| || ||||||||||||| ||||||||||| | ||||||    
T  2975413 tatgttttgattttatcattgacctcttttcattttcagagccgagcattcgaatt 2975358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 24614018 - 24614061
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||||||||||||||| |||||||||||||| |||||    
T  24614018 cttgtatttatcttttaaaaaatttaaatagaacattgttcttt 24614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 24969444 - 24969536
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | ||||||||||          || ||| |||||||||||||||||||||||||||| ||||||| |    
T  24969444 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgc----------caccttatatttatcttttaaaaaatataaatagatcattgcttt 24969533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 30507162 - 30507120
Alignment:
Q  61 tgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  30507162 tgtatttatcttttaaaaaatttaaatagaacattgttctttt 30507120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 37745010 - 37744916
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaa-aaaatataaatagaacat 94  Q
    ||||||||  ||||||||||| |||||||||| | | |||| ||||||||| |  || ||| |||||||||||||| ||||| ||||||||||||    
T  37745010 gttcctcaagtatacggtagtgattttcacctttggatgtatcgcatatatgcgacaccttatatttatcttttaaaaaaatttaaatagaacat 37744916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 36362961 - 36362869
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||| |||||| |||| ||| | | ||||||  |||||||||| |||  |||||||||||||||||||||| |||| ||| ||||| ||||||    
T  36362961 tatatggtagtgatttccacatttgggtgtattgcatatatacggcactttgtatttatcttttaaaaaatttaaacagagcattgttctttt 36362869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 15735154 - 15735189
Alignment:
Q  58 tcttgtatttatcttttaaaaaatataaatagaaca 93  Q
    |||||||||||||||||||||||| |||||||||||    
T  15735154 tcttgtatttatcttttaaaaaatttaaatagaaca 15735189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 186
Target Start/End: Complemental strand, 9578625 - 9578573
Alignment:
Q  134 gcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgat 186  Q
    ||||||||||| | |||||| ||||||||||||||||||  |||| |||||||    
T  9578625 gcctcttttcactcccagagtcgagcctccgaattctcaaggacggccctgat 9578573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 44655754 - 44655937
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||| |||||| ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  44655754 gttcctcatgtatacggtagtcatttttacctctgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 44655853  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||        ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  44655854 ttt-aaaaaaattatgttttgattttatcactggtctcttttcatttccagagccgagcctccgaattctcagggacggccctga 44655937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 14146313 - 14146495
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  14146313 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 14146412  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||| |||| |||||    
T  14146413 tttaaaaaaaa-tacgttttgattttatcactggcctcttttcattccaagagccgagcctccgaattctcagggacggccctg 14146495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 16140069 - 16140247
Alignment:
Q  2 ttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctt 101  Q
    |||||||  |||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||  |||||    
T  16140069 ttcctcatgtatacggtagtcattttcacctctaggtgtaccgcatatatacaacaccttgtatttatcttttaaaaaatataaatagaacatcactctt 16140168  T
Q  102 ttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgacc 181  Q
    ||         || |||||||||||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  16140169 ttaaaaaaaa-tacgttttgattttatcaccggcctcttttcattcccagagccgagcctccgaattctcagggacgacc 16140247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 50881443 - 50881618
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||| |||||||||||||||||| | ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  50881443 gttcctcatgtatactgtagtcattttcacctctagatgtaccgcatatatacgacaccttgtatttatcttttaaaaaatataaatagaacattgctct 50881542  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacg 178  Q
    |||         ||  |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  50881543 tttaaaaaaa--tagattttaattttatcactggcctcttttcatttccagagccgagcctccgaattctcagggacg 50881618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 5027562 - 5027746
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| ||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  5027562 gttcctcatctatatggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 5027661  T
Q  101 ttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||          || ||||||||||||||| ||||||||||||||| || ||| ||||||||||||||||||| |||| |||||    
T  5027662 tttaaaaaaaaaatacgttttgattttatcactggcctcttttcattccccgagtcgagcctccgaattctcagggacggccctg 5027746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 184
Target Start/End: Original strand, 6771814 - 6771989
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt--tnnnnn 108  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||            
T  6771814 tatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctctttaaaaaaaa 6771913  T
Q  109 nnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
         | ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  6771914 aaaacacgttttgattttatcactggcctcttttcattcccagagccgagcctccgaattctcagggacggccctg 6771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 17168969 - 17169152
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| ||||||||||||||||| | ||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||| |    
T  17168969 gttcctcatgtatatggtagtcattttcacctttgggtgtaccgcatatatacaacaccttatatttatcttttaaaaaatataaatagaacattgct-t 17169067  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctga 185  Q
    |||         || ||||||||||||||| || |||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  17169068 tttttaaaaaaatacgttttgattttatcactgacctcttttcatttccagagccgagcctccgaattcttagggacggccctga 17169152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 23185440 - 23185611
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  23185440 gttcctcatgtatacggtagtcattttcacctatgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 23185539  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
    |||         || ||||||||||||||| ||||||||||||| | |  |||||||||||||||||||||||    
T  23185540 tttaaaaaaaa-tacgttttgattttatcactggcctcttttcaatcctcgagccgagcctccgaattctcag 23185611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 5316693 - 5316875
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  5316693 gttcctcatgtatacggtagtcattttcacctctgggtgtaccgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacattgctct 5316792  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||||| || |||||||||||| | |  | ||||||||| ||||||||| |||| |||||    
T  5316793 tttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcctaaggtcgagcctccaaattctcagggacggccctg 5316875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 22865538 - 22865378
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttga 122  Q
    |||||||||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||         || |||||||    
T  22865538 attttcacctttgggtgtaccg-atatatagagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttgaaaaaaaatacgttttga 22865440  T
Q  123 ttttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||||||| || |||||||||||| ||||||||| |||||||||||||||| |||| |||||    
T  22865439 ttttatcattgacctcttttcattcccagagccgtgcctccgaattctcagggacggccctg 22865378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 4971718 - 4971533
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||| | | |||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||     
T  4971718 gttcctcatgtatacggtagtcattttcacttatgggtgtaccgcatatatacggtaccttgtatttatcttttaaaaaatataaatagaacattgctc- 4971620  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgatt 187  Q
    |||         |||||||||||||||||| ||| ||||||||||| || || ||||||||| |||||||||| |||  ||||||||    
T  4971619 tttaaaaaaaaatatgttttgattttatcactggtctcttttcattccccgaaccgagcctcagaattctcagggacagccctgatt 4971533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 19955730 - 19955898
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||||||| | | ||| |||||||||||||||||||||||||||| ||||||| |    
T  19955730 gttcctcatatatacggtagtcattttcacctttgggtgtaccgcatatatacggtaccttatatttatcttttaaaaaatataaatagatcattgct-t 19955828  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattct 170  Q
    |||         |  ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  19955829 tttaaaaaaaaattcgttttgattttatcactggcctcttttcattctcagagccgagcctccgaattct 19955898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 184
Target Start/End: Complemental strand, 27906771 - 27906646
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgag 158  Q
    ||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  27906771 cttgtatttatcttttaaaaaatataaatggaacattgctcttttaaaaaaaattatgttttgattttatcactggcctcttttcattttcagagccgag 27906672  T
Q  159 cctccgaattctcagcgacgaccctg 184  Q
    ||||||||||||||| |||| |||||    
T  27906671 cctccgaattctcagggacggccctg 27906646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 21741027 - 21740864
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt--nnnnn 108  Q
    |||| ||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||           
T  21741027 tatatggtagtcattttcacctctgggtgtatcgcatatatacggcaccttgtatttatcttttaaaaaatacaaatagaacattgctcttttaaaaaaa 21740928  T
Q  109 nnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctca 172  Q
        ||  |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  21740927 aaaatacattttgattttatcactggcctcttttcattctcagagccgagcctccgaattctca 21740864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 3406431 - 3406603
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||   |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  3406431 gttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 3406530  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
    |||          | ||||| ||||||||| || |||||||||||| || |||| |||||||| |||||||||    
T  3406531 tttaaaaaaaaaaacgttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcag 3406603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 3440389 - 3440217
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||||   |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||    
T  3440389 gttcctcatgtatacggtagtcattttcacctccgagtgtactgcatatatacggcaccttgtatttatcttttaaaaaatataaatagaacatcgctct 3440290  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcag 173  Q
    |||          | ||||| ||||||||| || |||||||||||| || |||| |||||||| |||||||||    
T  3440289 tttaaaaaaaaaaacgttttcattttatcactgacctcttttcattccccgagctgagcctccaaattctcag 3440217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 40501880 - 40501700
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    ||||||||||||||||| |||| | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||| |||| || ||||           
T  40501880 tatacggtagtcatttttacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagatcattactttttttttaaaa 40501781  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgattaaat 191  Q
      || ||||||||||||||| || ||||||||||||  ||||| |||||||||||||||| || |||| ||||||| ||||    
T  40501780 aatacgttttgattttatcactgacctcttttcattctcagagtcgagcctccgaattcttagggacggccctgataaaat 40501700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 1366968 - 1366812
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnn 110  Q
    ||||||||||||||||||| || | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||  ||           
T  1366968 tatacggtagtcattttcatctttgggtgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgctc--ttaaaaaaa 1366871  T
Q  111 nttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattc 169  Q
      |||||||| | ||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  1366870 aatatgttttcaatttatcactggcctcttttcattcccagagctgagcctccaaattc 1366812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 9173123 - 9172940
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | | |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| | |    
T  9173123 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 9173024  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||          ||  |||| | |||||||  |||||||||||||| ||||||||||||||||||||||| || |||| |||||    
T  9173023 ttaaaacaaaaatacatttttaatttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 9172940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 9181105 - 9180922
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | | |||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||| | |    
T  9181105 gttcctcatgtatacggtagtcattttcacctttggatgtaccgcatatatacggcaccttatatttatcttttaaaaaatataaatagaacattgtttt 9181006  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    ||          ||  |||| | |||||||  |||||||||||||| ||||||||||||||||||||||| || |||| |||||    
T  9181005 ttaaaacaaaaatacatttttaatttatcaccggcctcttttcattcccagagccgagcctccgaattcttagggacggccctg 9180922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 6889633 - 6889789
Alignment:
Q  10 atatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnn 109  Q
    |||||||| | |||||||||||||| | ||||||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||||          
T  6889633 atatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaa 6889732  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaatt 168  Q
       || ||||||||||||||| || ||||||||||||  |||| |||||||||||||||    
T  6889733 a--tacgttttgattttatcactgacctcttttcattctcagaaccgagcctccgaatt 6889789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 6891479 - 6891635
Alignment:
Q  10 atatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnn 109  Q
    |||||||| | |||||||||||||| | ||||||||||||||||   |  ||||||||||||||||||||||||||||||||||||||||||||          
T  6891479 atatacggcaatcattttcacctctggatgtaccgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacattgctcttttaaaaaa 6891578  T
Q  110 nnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaatt 168  Q
       || ||||||||||||||| || ||||||||||||  |||| |||||||||||||||    
T  6891579 a--tacgttttgattttatcactgacctcttttcattctcagaaccgagcctccgaatt 6891635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 27559650 - 27559752
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||| |    
T  27559650 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgcttt 27559749  T
Q  101 ttt 103  Q
    |||    
T  27559750 ttt 27559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 41697237 - 41697072
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||| ||| | ||||| ||||||||||   |  ||||||||||||||||||||||||||||||||||| |||||    
T  41697237 gttcctcatgtatacggtagtcattttcacttctggatgtactgcatatatacgatactttgtatttatcttttaaaaaatataaatagaacatcgctct 41697138  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaat 167  Q
    |||         || ||||||||||||||| || |||||||||||| |||||||||||| |||||||    
T  41697137 tttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagagccgagcttccgaat 41697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 51607540 - 51607374
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacag-catcttgtatttatcttttaaaaaatataaatagaacattgctc 99  Q
    ||||||||  |||||||||||||||||||| | | |||||||||||||||||| | || ||| |||||||||||||||||||||||||| ||||||  |     
T  51607540 gttcctcatgtatacggtagtcattttcacgtttgggtgtaccgcatatatacggccaccttatatttatcttttaaaaaatataaataaaacatt--tt 51607443  T
Q  100 ttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaatt 168  Q
    ||||         || ||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  51607442 ttttttaaaaaaatacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaatt 51607374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 13913572 - 13913394
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatataca--gcatcttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnn 108  Q
    |||||||||||||||||||| | | ||||||||||||||||||   ||| ||| |||||||||||||||||||||||||||| ||||||| ||||         
T  13913572 tatacggtagtcattttcacttttaggtgtaccgcatatatacccggcaacttatatttatcttttaaaaaatataaatagatcattgct-tttttaaaa 13913474  T
Q  109 nnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctgatta 188  Q
        ||  |||||||||||||| |||| ||||||||||  ||||||| |||||||||||||| || |||| || ||||||    
T  13913473 aaaatacattttgattttatcactggcatcttttcattctcagagccaagcctccgaattcttagggacggccttgatta 13913394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 38547136 - 38547035
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| | |||| |||||||| | | |||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||    
T  38547136 gttcctcatgtatatgatagtgattttcacatttgggtgtaccacatatatacggcaccttgtatttatcttttaaaaaatttaaatagaacattgatct 38547037  T
Q  101 tt 102  Q
    ||    
T  38547036 tt 38547035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 39134823 - 39134720
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatc-ttttaaaaaatataaatagaacattgctc 99  Q
    ||||||||  ||||| ||||| ||| |||||| | ||||||  |||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||    
T  39134823 gttcctcatgtatacagtagtgattatcacctttgggtgtattgcatatatacagcaccttgtatttatctttttaaaaaatttaaatagaacattgttc 39134724  T
Q  100 tttt 103  Q
    ||||    
T  39134723 tttt 39134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 45758507 - 45758609
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||| |||||||||| | | ||||   |||||||||| || |||| |||||||||||||||||| |||||||||||||| |||    
T  45758507 gttcctcatgtatacggtagtgattttcacctttggatgtataacatatatacaacaccttgcatttatcttttaaaaaatttaaatagaacattgttct 45758606  T
Q  101 ttt 103  Q
    |||    
T  45758607 ttt 45758609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 33170782 - 33170867
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    ||||||||||| |||||||||  ||||||||||||||||||||| ||  |||||||||  ||||||||||| |||||| |||||||    
T  33170782 tatacggtagtgattttcaccatttggtgtaccgcatatatacaacacattgtatttacgttttaaaaaatttaaatataacattg 33170867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 34247154 - 34247219
Alignment:
Q  116 gttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgacc 181  Q
    ||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||  |||||||    
T  34247154 gttttgattttatcactgaccttttttcatttccagagccgagcctccgaattctcaaggacgacc 34247219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 6221691 - 6221791
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    |||||||| ||||||| || | |||||||| | ||| |||||||| ||||||| |||  ||||||||||||||| |||||| |||||||||||||| |||    
T  6221691 gttcctcatatatacgataatgattttcacattttgatgtaccgcttatatacggcacattgtatttatctttt-aaaaatttaaatagaacattgttct 6221789  T
Q  101 tt 102  Q
    ||    
T  6221790 tt 6221791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 26803971 - 26804059
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||| ||||||||||    ||||| |||||||||||  |||||||||||||||||||||||||| |||||| | ||||| |||||    
T  26803971 tatacggtagtgattttcacctt---gtgtatcgcatatatacgacatcttgtatttatcttttaaaaaatttaaatatagcattgttcttt 26804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43235870 - 43235774
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttt--taaaaaatataaatagaacatt 95  Q
    ||||||||  |||||| |||| |||||||||| | |||||||  |||||||||  ||||||||||||||||||   ||||||| |||||||||||||    
T  43235870 gttcctcatgtatacgatagtgattttcacctttgggtgtacatcatatatacgacatcttgtatttatctttaaaaaaaaatttaaatagaacatt 43235774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 38853545 - 38853637
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| |||||||||| | | | |||  |||||||||  || |||||||||||| |||||||||| ||||||||||| || ||||||    
T  38853545 tatacggtagtgattttcacctttggatatacaacatatatacgacaccttgtatttatcatttaaaaaatttaaatagaacactgttctttt 38853637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 17322664 - 17322621
Alignment:
Q  60 ttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  17322664 ttgtatttatctttaaaaaaatataaatagaacattgttctttt 17322621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 34247066 - 34247105
Alignment:
Q  14 acggtagtcattttcacctcttggtgtaccgcatatatac 53  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  34247066 acggtagtcattttcatctcttggtgtaccgcatatatac 34247105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 5533326 - 5533428
Alignment:
Q  2 ttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatctttt-aaaaaatataaatagaacattgctct 100  Q
    |||||||  ||||||||||| |||||||||| |   |||||  ||||||||| ||| ||||| |||||||||| ||||||| ||||||||| |||| |||    
T  5533326 ttcctcatgtatacggtagtgattttcacctttgattgtacatcatatatacggcaccttgtgtttatcttttaaaaaaatttaaatagaatattgttct 5533425  T
Q  101 ttt 103  Q
    |||    
T  5533426 ttt 5533428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 35392295 - 35392376
Alignment:
Q  13 tacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||| |||||||||| | | | |||||||||||||| ||| ||||||||||||  ||||||||| |||||| ||||||    
T  35392295 tacggtagtgattttcacctttggatataccgcatatatacggcaccttgtatttatc-cttaaaaaatttaaataaaacatt 35392376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 44895721 - 44895845
Alignment:
Q  63 tatttatcttttaaaaaatataaatagaacattgctctttt-nnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcct 161  Q
    |||||||||||||||||||||||||||| ||||| | ||||          |||||||||||||| |||  | |||||||||||| ||||| |||| |||    
T  44895721 tatttatcttttaaaaaatataaatagatcattgtttttttaaaaaaaaaatatgttttgattttttcaccgacctcttttcattcccagaaccgaacct 44895820  T
Q  162 ccgaattctcagcgacgaccctgat 186  Q
    ||||||| | || ||| ||||||||    
T  44895821 ccgaatttttagagacaaccctgat 44895845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 50146424 - 50146476
Alignment:
Q  117 ttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattc 169  Q
    |||| |||||||||  || ||| |||||||| |||||||||||||||||||||    
T  50146424 tttttattttatcatgggtctcgtttcatttacagagccgagcctccgaattc 50146476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 1345 - 1527
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  ||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||    
T  1345 gttcctcatgtatacggtagtcattttcatctctgggtgtaccgcatatatacggcagcttgtatttatcttttaaaaaatataaatagaacagtgctct 1444  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| |||| |||||    
T  1445 tttaaaaaaaa-tacgttttgattttatcactgacctcttttcattcccagagccgagcctccgaattctcagggacggccctg 1527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 106540 - 106723
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||||||||||||||||||||| | ||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||| |||    
T  106540 gttcctcatgtatacggtagtcattttcacctttgggtgtaccgcatatatacgacaccttatatttatcttttaaaaaatataaatagaacattgttct 106639  T
Q  101 tttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagcctccgaattctcagcgacgaccctg 184  Q
    |||         || ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| || |||| |||||    
T  106640 tttaaaaaaaaatacgttttgattttatcactggcctcttttcattcccagagccgagcctccaaattcttagggacggccctg 106723  T

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Target: scaffold1590 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1590
Description:

Target: scaffold1590; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 349 - 257
Alignment:
Q  11 tatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctctttt 103  Q
    ||||||||||| |||||||| | | ||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  349 tatacggtagtgattttcacatttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattgttctttt 257  T

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Target: scaffold0018 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 173611 - 173516
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    ||||||||| ||||||||||| ||||| |||| | |||||| ||||||||||| | | ||||||||||||||||||||||| ||||||||||||||    
T  173611 gttcctcacgtatacggtagtgatttttacctttgggtgtatcgcatatatacggtaccttgtatttatcttttaaaaaatttaaatagaacattg 173516  T

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Target: scaffold0001 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 183121 - 183244
Alignment:
Q  60 ttgtatttatcttttaaaaaatataaatagaacattgctcttttnnnnnnnnttatgttttgattttatcagtggcctcttttcatttccagagccgagc 159  Q
    |||||||||||||||||||||||||||||||||||  |||||||        | | ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  183121 ttgtatttatcttttaaaaaatataaatagaacatctctcttttaaaaaaaat-acgttttaattttatcactggcctcttttcattcccagagccgagc 183219  T
Q  160 ctccgaattctcagcgacgaccctg 184  Q
    ||| ||||| |||| |||| |||||    
T  183220 ctctgaattttcagggacggccctg 183244  T

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Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 181921 - 181969
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatat 49  Q
    ||||||||  |||||||||||||||||||||||| | ||||||||||||    
T  181921 gttcctcatgtatacggtagtcattttcacctctggatgtaccgcatat 181969  T

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Target: scaffold0097 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 38927 - 39022
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattg 96  Q
    |||||||| |||||||||||| |||||||| | |  ||||| |||||||||||  || ||||||||||||||||||||||| ||||||||||||||    
T  38927 gttcctcatatatacggtagtgattttcacatttgtgtgtatcgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaacattg 39022  T

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Target: scaffold0012 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 206590 - 206496
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  ||||||||||| |||||||||  | ||||||||||||||||||  || ||||||||||||||||| ||||| |||||||||||||    
T  206590 gttcctcatgtatacggtagtgattttcaccattgggtgtaccgcatatatacgacaccttgtatttatcttttacaaaatttaaatagaacatt 206496  T

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Target: scaffold0182 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 24083 - 23993
Alignment:
Q  12 atacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    |||||||| | |||||||| | | ||||||||||||||||||  || ||||||||||||||||||||||| ||||||||| |||| |||||    
T  24083 atacggtaatgattttcacttttgggtgtaccgcatatatacgacaccttgtatttatcttttaaaaaatttaaatagaatattgttcttt 23993  T

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Target: scaffold1320 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1356 - 1450
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacatt 95  Q
    ||||||||  |||||| |||| |||||||| | | ||||||  |||||||||||||| ||| ||||||||||||||||| | |||||||||||||    
T  1356 gttcctcatgtatacgatagtgattttcacatttgggtgtatagcatatatacagcaccttatatttatcttttaaaaattttaaatagaacatt 1450  T

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Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 230960 - 230858
Alignment:
Q  1 gttcctcacatatacggtagtcattttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaatataaatagaacattgctct 100  Q
    ||||||||  |||| |||||| |||||||||| | ||| || |||||||||||| || |||  ||||||||||||| |||| |||||||||||||| |||    
T  230960 gttcctcatgtataaggtagtgattttcacctttgggtatatcgcatatatacaacaccttaaatttatcttttaacaaatttaaatagaacattgttct 230861  T
Q  101 ttt 103  Q
    |||    
T  230860 ttt 230858  T

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Target: scaffold0227 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 102
Target Start/End: Original strand, 16125 - 16168
Alignment:
Q  59 cttgtatttatcttttaaaaaatataaatagaacattgctcttt 102  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||    
T  16125 cttgtatttatcttttaaaaaatttaaatagaacatttctcttt 16168  T

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Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 40109 - 40191
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaata--taaatagaacattgctctttt 103  Q
    ||||||||||   |||||||  |||| |||| ||| |||||||||||||||||||||| |  |||||||||||||| ||||||    
T  40109 attttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgttctttt 40191  T

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Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 138169 - 138251
Alignment:
Q  23 attttcacctcttggtgtaccgcatatatacagcatcttgtatttatcttttaaaaaata--taaatagaacattgctctttt 103  Q
    ||||||||||   |||||||  |||| |||| ||| |||||||||||||||||||||| |  |||||||||||||| ||||||    
T  138169 attttcaccttagggtgtacaacataaatacggcaccttgtatttatcttttaaaaaaaaattaaatagaacattgttctttt 138251  T

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