View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9794_low_9 (Length: 407)
Name: NF9794_low_9
Description: NF9794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9794_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 43639851 - 43640245
Alignment:
| Q |
1 |
ccttaacaccttctttcactccttgagggtctaccttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttc |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639851 |
ccttaacaccttctttcactccttgagggtccaccttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttc |
43639950 |
T |
|
| Q |
101 |
ttctagaagtttgaatgttccaaggtggtctctaacaaccttaatcgcttcgttcattaatatataaggatcgaagtttgcatgaatgtataaacatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43639951 |
ttctagaagtttgaatgttccaaggtggtctctaacaaccttaatcgcttcgttcattaatatataaggatcgaagtttgcatgaatgtataaacatgtt |
43640050 |
T |
|
| Q |
201 |
ttgaaagttgattcaacaacacgtgtggatccactttccatgcaaatgtccacgttgttattgttttctcctggttgaagacaagctctgaaagaacctt |
300 |
Q |
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| T |
43640051 |
ttgaaagttgattcaacaacacgtgtggatccactttccatgcaaatgtccacgttgttattgttttctcctggttgaagacaagctctgaaagaacctt |
43640150 |
T |
|
| Q |
301 |
cgatgagtggtaaaagaagaacgtagggacgttgtttaacggtgtcgttttcaagtataatcatttgagtttcgttttctatgtcattgcctttg |
395 |
Q |
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| T |
43640151 |
cgatgagtggtaaaagaagaacgtagggacgttgtttaacggtgtcgttttcaagtataatcatttgagtttcgttttctatgtcattgcctttg |
43640245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 486520 - 486412
Alignment:
| Q |
1 |
ccttaacaccttctttcactccttgagggtctaccttaaggtaaaatgcatcccatgtacaccatccaaatttatcaactatatcaggtattgttttttc |
100 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||| | || | |||||||| |
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| T |
486520 |
ccttaacaccttcccaaactccttgagggtgtaccttaagataaaatgcatcccatgtacaccatccaaatttatccactattccggggacagttttttc |
486421 |
T |
|
| Q |
101 |
ttctagaag |
109 |
Q |
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||||||||| |
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| T |
486420 |
ttctagaag |
486412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 36432407 - 36432444
Alignment:
| Q |
42 |
taaaatgcatcccatgtacaccatccaaatttatcaac |
79 |
Q |
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||||| ||||||||||||||||| |||||||||||||| |
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|
| T |
36432407 |
taaaaagcatcccatgtacaccaaccaaatttatcaac |
36432444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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