View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_11 (Length: 450)
Name: NF9795A_low_11
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 24 - 450
Target Start/End: Complemental strand, 38567284 - 38566858
Alignment:
| Q |
24 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567284 |
ggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaata |
38567185 |
T |
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| Q |
124 |
gagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattgg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567184 |
gagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattgg |
38567085 |
T |
|
| Q |
224 |
ttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38567084 |
ttggacaaagtggaagtggaaagtcgacaattatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaa |
38566985 |
T |
|
| Q |
324 |
agaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaa |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38566984 |
agaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatatggtaaa |
38566885 |
T |
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| Q |
424 |
gatggagcaacgattgaagaaataaga |
450 |
Q |
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| T |
38566884 |
gatggagcaacgattgaagagataaga |
38566858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 450
Target Start/End: Complemental strand, 38526162 - 38525733
Alignment:
| Q |
21 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaa |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38526162 |
tcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgag |
38526063 |
T |
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| Q |
121 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||| |
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| T |
38526062 |
atagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcat |
38525963 |
T |
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| Q |
221 |
tggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacat |
320 |
Q |
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|||||||||||||||||||||||||||| ||| |||| | ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
38525962 |
tggttggacaaagtggaagtggaaagtccacagttattagtttggtagaaagattctatgatccacaggccggtgaagtacttatcgatggaattaacat |
38525863 |
T |
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| Q |
321 |
gaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggt |
420 |
Q |
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||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| |
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| T |
38525862 |
gaaagaacttcagcttaggtggatcagagggaaaattggtcttgtcagccaggagccagtgttatttgcatccagcattaaggataacattgcatatggt |
38525763 |
T |
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| Q |
421 |
aaagatggagcaacgattgaagaaataaga |
450 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
38525762 |
aaagatggagcaacaattgaagaaataaga |
38525733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 51199472 - 51199554
Alignment:
| Q |
220 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
302 |
Q |
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||||| || |||||||| |||||||| || ||| || ||| |||| |||||||||| |||||||||||||| ||||||||||| |
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| T |
51199472 |
ttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttct |
51199554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 285
Target Start/End: Original strand, 51145408 - 51145548
Alignment:
| Q |
145 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
243 |
Q |
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|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
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| T |
51145408 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51145506 |
T |
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| Q |
244 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
285 |
Q |
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|| || ||| || | | |||| |||||||||||||||||||| |
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| T |
51145507 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51145548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 285
Target Start/End: Original strand, 51156549 - 51156689
Alignment:
| Q |
145 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
243 |
Q |
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|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
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| T |
51156549 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51156647 |
T |
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| Q |
244 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
285 |
Q |
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|| || ||| || | | |||| |||||||||||||||||||| |
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| T |
51156648 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51156689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 51212627 - 51212687
Alignment:
| Q |
229 |
caaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacagg |
289 |
Q |
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|||||||| |||||||| || ||| | || |||||| |||||||||| ||||||||||||| |
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| T |
51212627 |
caaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacagg |
51212687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 302
Target Start/End: Complemental strand, 49737396 - 49737314
Alignment:
| Q |
220 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
302 |
Q |
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||||| ||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
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| T |
49737396 |
ttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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