View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9795A_low_113 (Length: 314)
Name: NF9795A_low_113
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_113 |
 | |
|
| [»] chr8 (9 HSPs) |
| |
|
| [»] scaffold0065 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 314
Target Start/End: Original strand, 13791160 - 13791469
Alignment:
| Q |
5 |
agtttggtgttgtgctagaacaaatgtctaagttgaatttaagctcaaaagttgcagtggttaagcaaactgacagtttaaggaacaaatctatctcttt |
104 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13791160 |
agtttgatgttgtgctagaacaaatgtctaagttgaatttaagctcaaaagttccagtggttaagcaaactgacagtttaaggaacaaatctatctcttt |
13791259 |
T |
|
| Q |
105 |
tttgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataaatctcttgacacaaccacatggaaatatctcgtcaattgttattgta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13791260 |
tttgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataaatctcttgacacaaccacatggaaatatctcgtcaattgttattgta |
13791359 |
T |
|
| Q |
205 |
ggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgtgtatcta |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13791360 |
ggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgtgtatcta |
13791459 |
T |
|
| Q |
305 |
gtaactttga |
314 |
Q |
| |
|
|||||||||| |
|
|
| T |
13791460 |
gtaactttga |
13791469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 314
Target Start/End: Complemental strand, 3282734 - 3282425
Alignment:
| Q |
5 |
agtttggtgttgtgctagaacaaatgtctaagttgaatttaagctcaaaagttgcagtggttaagcaaactgacagtttaaggaacaaatctatctcttt |
104 |
Q |
| |
|
|||||| ||||||| | ||| ||||| ||| |||||||||| | |||||| || |||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3282734 |
agtttgatgttgtggtggaagaaatgactagattgaatttaaacccaaaagctgtggtggttaagcaaacagatagtttaaggaacaaatctatctcttt |
3282635 |
T |
|
| Q |
105 |
tttgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataaatctcttgacacaaccacatggaaatatctcgtcaattgttattgta |
204 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
3282634 |
tttgttagaatcaaatatcaatggaagagaagatgataaaaaggagattataaatctcttgaggcaaccacgtggaaatatctcatcaattgctattgta |
3282535 |
T |
|
| Q |
205 |
ggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgtgtatcta |
304 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||| | |||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
3282534 |
ggtattggaggtataggcaagacaactcttgctcagttcatttataatgatgaggaagtgcaaaatcattttgaaaagaaaatgtgggtatgtatatcta |
3282435 |
T |
|
| Q |
305 |
gtaactttga |
314 |
Q |
| |
|
||||||||| |
|
|
| T |
3282434 |
ataactttga |
3282425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 3002301 - 3002469
Alignment:
| Q |
107 |
tgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataaatctcttgacacaaccacatgg------aaatatctcgtcaattgttat |
200 |
Q |
| |
|
|||||||||| | ||||| ||||||||||| |||||||||||||||||| | || |||| |||||||||||| |||| |||| | |||| ||| |
|
|
| T |
3002301 |
tgttagaatcggatatcattggaagagaagacgataaaaaggagattatacaccttttgagacaaccacatggaaaccaaaatgtctccttgattgctat |
3002400 |
T |
|
| Q |
201 |
tgtaggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaa |
269 |
Q |
| |
|
||| || ||||| ||| | || |||||||||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
3002401 |
tgttgggattggtggtttaggaaagacaactcttgctcagttggtatataatgatggagaagtgcaaaa |
3002469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 299
Target Start/End: Complemental strand, 2916346 - 2916067
Alignment:
| Q |
26 |
aaatgtctaagttgaatttaagctcaaaagttgcagtggttaagcaaactgacagtttaaggaacaaatctatctcttttttgttagaatcaaacatcat |
125 |
Q |
| |
|
||||| ||||||||||||| ||| ||| |||| ||||| ||||||| |||| | |||||| || || ||||||| | ||||||||| | ||||| |
|
|
| T |
2916346 |
aaatgactaagttgaatttgagccaaaatgttgtggtggtgaagcaaagtgacgatgtaaggagagaaacttgctcttttgtattagaatcagatatcat |
2916247 |
T |
|
| Q |
126 |
gggaagagaagatgataaaaaggagattataaatctcttgacacaaccacatggaaa------tatctcgtcaattgttattgtaggtattggaggtatt |
219 |
Q |
| |
|
|| ||||||||| ||||||| |||||| ||||| | |||| ||||||||| |||| | |||| | |||| ||||| |||||||| ||| | |
|
|
| T |
2916246 |
tggtagagaagataataaaaaagagattgtaaatttattgaggcaaccacatagaaaccacaatgtctccttgattgccattgttggtattggcggttta |
2916147 |
T |
|
| Q |
220 |
ggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgtgt |
299 |
Q |
| |
|
|| |||||| ||||||||| | | ||||||||||||| |||||||||||| | ||||||||||| || ||||||||||| |
|
|
| T |
2916146 |
ggtaagacagctcttgctcaactggtatataatgatggggaagtgcaaaaaaagtttgaaaagaagatatgggtatgtgt |
2916067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 2980208 - 2980258
Alignment:
| Q |
107 |
tgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataa |
157 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
2980208 |
tgttagaatcaaatatcattggaagagaagatgataaaaacaagattataa |
2980258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 2711427 - 2711370
Alignment:
| Q |
100 |
tcttttttgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataa |
157 |
Q |
| |
|
|||||| ||||||||||| | || || ||||||||||||||||||||| ||||||||| |
|
|
| T |
2711427 |
tcttttgtgttagaatcagagattattggaagagaagatgataaaaagaagattataa |
2711370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 3170411 - 3170354
Alignment:
| Q |
100 |
tcttttttgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataa |
157 |
Q |
| |
|
|||||| ||||||||||| | ||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
3170411 |
tcttttgtgttagaatcagagatcattggaagagaagatgataaaaagaagatcataa |
3170354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 2711323 - 2711222
Alignment:
| Q |
198 |
tattgtaggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgt |
297 |
Q |
| |
|
|||||| |||||||| ||| | || |||||| ||||||||| ||| ||||| ||||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
2711323 |
tattgttggtattggtggtttgggaaagacagctcttgctcaattggtatacaatgatgatcaagtgcaaaatttgtttgaaaagagtatgtgggtatgt |
2711224 |
T |
|
| Q |
298 |
gt |
299 |
Q |
| |
|
|| |
|
|
| T |
2711223 |
gt |
2711222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 2980305 - 2980421
Alignment:
| Q |
198 |
tattgtaggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgt |
297 |
Q |
| |
|
|||||| |||||||| ||| | || ||||| ||||||||| ||| ||||| || |||| |||||||| || |||||||||| ||||||||||||| |
|
|
| T |
2980305 |
tattgttggtattggtggtttgggaaagacggctcttgctcaattggtatacaacgatgaagaagtgcagaatttgtttgaaaagagaatgtgggtatgt |
2980404 |
T |
|
| Q |
298 |
gtatctagtaactttga |
314 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
2980405 |
gtctctgataactttga |
2980421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 198 - 314
Target Start/End: Original strand, 45532 - 45648
Alignment:
| Q |
198 |
tattgtaggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgt |
297 |
Q |
| |
|
||||||||| ||||| ||| | || |||||| ||||||||| ||| ||||| ||||||| ||||| |||| ||||||||||| |||||||||||| |
|
|
| T |
45532 |
tattgtagggattggcggtttgggaaagacagctcttgctcaattggtatacaatgatggtgaagtaacaaagtcttttgaaaagaggatgtgggtatgt |
45631 |
T |
|
| Q |
298 |
gtatctagtaactttga |
314 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
45632 |
gtctctaataactttga |
45648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 299
Target Start/End: Complemental strand, 3919285 - 3919088
Alignment:
| Q |
108 |
gttagaatcaaacatcatgggaagagaagatgataaaaaggagattataaatctcttgacacaaccacatggaaat----atctcgt--caattgttatt |
201 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||| ||||||||| | |||| ||||||||||||||| || || | ||| |||| |
|
|
| T |
3919285 |
gttagaatcggatatcattggaagagaagatgataaaaagaagattataagcttgttgatgcaaccacatggaaatcaaaatgtctttgtggttggtatt |
3919186 |
T |
|
| Q |
202 |
gtaggtattggaggtattggcaagacaactcttgctcgattcgtatataatgatgtggaagtgcaaaagcattttgaaaagaaaatgtgggtatgtgt |
299 |
Q |
| |
|
|| || ||||| ||| | || |||||||||||||||| ||| |||| |||||||||||||||||||| ||||||| || |||||||||||||| |
|
|
| T |
3919185 |
gttgggattggtggtttaggaaagacaactcttgctcaattgatatacaatgatgtggaagtgcaaaactcgtttgaaaggagtatgtgggtatgtgt |
3919088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 10755801 - 10755744
Alignment:
| Q |
100 |
tcttttttgttagaatcaaacatcatgggaagagaagatgataaaaaggagattataa |
157 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||| ||||||||||| | ||||||| |
|
|
| T |
10755801 |
tcttttgtgttagaatcaaatatcattggaagagaatatgataaaaagaaaattataa |
10755744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University