View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_121 (Length: 306)
Name: NF9795A_low_121
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_121 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 43061871 - 43062165
Alignment:
| Q |
6 |
acagaaaagaaatatttggtaactaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttgtcgggcaaaacccgg |
105 |
Q |
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| T |
43061871 |
acagaaaagaaatatttggtaactaaaataaaattctacgtatgcaaataccgtaggtagaacctagaacacaacattgcatttttcgggcaaaacccgg |
43061970 |
T |
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| Q |
106 |
gtgaaggtaaaggttgcattattgtttaatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttga |
205 |
Q |
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| T |
43061971 |
gtgaaggtaaaggttgcattattgtttgatttcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttga |
43062070 |
T |
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| Q |
206 |
acctaatcctgaagtagagcttcacatagataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtaccaac |
300 |
Q |
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| T |
43062071 |
acctaatcctgaagtagagcttcacatagataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtaccaac |
43062165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 137 - 293
Target Start/End: Original strand, 43054751 - 43054907
Alignment:
| Q |
137 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
236 |
Q |
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| T |
43054751 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
43054850 |
T |
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| Q |
237 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
293 |
Q |
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| T |
43054851 |
atcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgag |
43054907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 293
Target Start/End: Original strand, 43049217 - 43049373
Alignment:
| Q |
137 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
236 |
Q |
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|||| |||||||||| ||||||||| |||||||||||||| | |||||| | || |||||| ||||||||||||| ||||| ||| |||||||||| |
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| T |
43049217 |
tcaaaggaactttgaagtcacatttcaccttaggcttgtaatcacccgatatcaaatccccaagtctgaacctaatcctaaagtaaagcctcacatagat |
43049316 |
T |
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| Q |
237 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
293 |
Q |
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| T |
43049317 |
atcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgag |
43049373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 293
Target Start/End: Original strand, 43024145 - 43024222
Alignment:
| Q |
216 |
gaagtagagcttcacatagataccataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgag |
293 |
Q |
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| T |
43024145 |
gaagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgag |
43024222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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