View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9795A_low_131 (Length: 295)
Name: NF9795A_low_131
Description: NF9795A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9795A_low_131 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 34 - 289
Target Start/End: Original strand, 15755207 - 15755462
Alignment:
| Q |
34 |
tagaaagagaatgttagcctaagtcttgttatttttctcttaccttcaaatattgattattgtttgtatacatgtgcaggttccttaataaggcatgtgt |
133 |
Q |
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| T |
15755207 |
tagaaagagagtgttagactaagtattgttatttttctcttattttaaaatattaattcttgtttgtatacatgtgcaggttccttaacaaggcatgtgt |
15755306 |
T |
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| Q |
134 |
ggacactggttcaagtactagtaatgaatggatggtatgcacaataacacaagtagaggaaaccaaacaaatccttagcttaatccctatttgggctgct |
233 |
Q |
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| T |
15755307 |
ggacactggttcaagtactagtaatgaatggatgttatgcacaataacacaagtagaggaaaccaaacaaatccttagcttaatacctatttgggttgcc |
15755406 |
T |
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| Q |
234 |
acatttattccaagtgcaatgattgctcaaataaatccccttttcataaaacaagg |
289 |
Q |
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| T |
15755407 |
acatttattccaagtgcaatgattgctcaaataaatacccttttcataaaacaagg |
15755462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 108 - 289
Target Start/End: Original strand, 15766150 - 15766331
Alignment:
| Q |
108 |
tgcaggttccttaataaggcatgtgtggacactggttcaagtactagtaatgaatggatggtatgcacaataacacaagtagaggaaaccaaacaaatcc |
207 |
Q |
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| T |
15766150 |
tgcagattccttaacaaggcatgtgtggacactggttcaagtgcaagtgatgagtggatgttatgcacagtaacacaagtggaagaaaccaaacaaatcc |
15766249 |
T |
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| Q |
208 |
ttagcttaatccctatttgggctgctacatttattccaagtgcaatgattgctcaaataaatccccttttcataaaacaagg |
289 |
Q |
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| T |
15766250 |
ttagcttagtccctatttgggttgcaacatttattccaagtgcaatgatagctcaaataaataccctttttgtaaaacaagg |
15766331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 104 - 269
Target Start/End: Original strand, 15779261 - 15779426
Alignment:
| Q |
104 |
catgtgcaggttccttaataaggcatgtgtggacactggttcaagtactagtaatgaatggatggtatgcacaataacacaagtagaggaaaccaaacaa |
203 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||| ||||||| || |||||| |||| | ||||||||||||||||| ||||||||| |
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| T |
15779261 |
catgtgtaggttccttaataaggcttgtgtggacactggttcaagaactagtagcgagtggatgatatgtcctataacacaagtagaggagaccaaacaa |
15779360 |
T |
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| Q |
204 |
atccttagcttaatccctatttgggctgctacatttattccaagtgcaatgattgctcaaataaat |
269 |
Q |
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| T |
15779361 |
atcctaagtgtaatccctatttgggttgctacatttattcctagtgcaatgattgctcagataaat |
15779426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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